Detailed information NTG1035710

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABVF47_RS07145
• Genome accession: NZ_CP166869
• Coordinates: 1559126..1559977 (+)
• Length: 283 a.a.
• NCBI ID: WP_370469867.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Acer06
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1554126..1564977

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABVF47_RS07130 (ABVF47_007130)	recJ	1554261..1555958 (+)	1698	WP_371687816.1	single-stranded-DNA-specific exonuclease RecJ	-
ABVF47_RS07135 (ABVF47_007135)	pilF	1556158..1557837 (+)	1680	WP_371687817.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABVF47_RS07140 (ABVF47_007140)	pilG	1557887..1559119 (+)	1233	WP_370469868.1	type II secretion system F family protein	Machinery gene
ABVF47_RS07145 (ABVF47_007145)	pilD	1559126..1559977 (+)	852	WP_370469867.1	A24 family peptidase	Machinery gene
ABVF47_RS07150 (ABVF47_007150)	coaE	1559974..1560588 (+)	615	WP_367421119.1	dephospho-CoA kinase	-
ABVF47_RS07155 (ABVF47_007155)	zapD	1560594..1561346 (+)	753	WP_100140881.1	cell division protein ZapD	-
ABVF47_RS07160 (ABVF47_007160)	yacG	1561346..1561543 (+)	198	WP_100140841.1	DNA gyrase inhibitor YacG	-
ABVF47_RS07165 (ABVF47_007165)	-	1561592..1562509 (+)	918	WP_370469866.1	ABC transporter ATP-binding protein	-
ABVF47_RS07170 (ABVF47_007170)	-	1562512..1563267 (+)	756	WP_100140882.1	ABC transporter permease	-
ABVF47_RS07175 (ABVF47_007175)	-	1563324..1563572 (+)	249	WP_100140843.1	BolA family protein	-
ABVF47_RS07180 (ABVF47_007180)	murA	1563616..1564872 (+)	1257	WP_371687818.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 31195.20 Da
• Isoelectric Point: 7.9571

>NTDB_id=1035710 ABVF47_RS07145 WP_370469867.1 1559126..1559977(+) (pilD) [Snodgrassella alvi strain Acer06]
MLSDTLFFSIIALISGLAVGSFLNVVIYRLPIMMERSWQAEARMALQLPAENFARFNLCIPPSACPHCQHKIRWWQNIPL
ISYLLLHGRCAACAKPISPRYFCVELLTGLAFAAVIWRYDVTPVAAGGLVLTAALITLTFIDADTQLLPDQITLPLLWLG
LLFNWYSEFVSLSAAIWGAVAGYMSLWSLFWLFKLITGKDGMGYGDFKLLAALGAWMGAAALPLIVFIAAIVGIIASLIL
KVARSQPMAFGPALAISGWIVWMANSQISQLIHWWLQLSGFDA

Nucleotide

• Length: 852 bp

>NTDB_id=1035710 ABVF47_RS07145 WP_370469867.1 1559126..1559977(+) (pilD) [Snodgrassella alvi strain Acer06]
ATGTTATCAGATACACTGTTTTTCTCCATCATCGCATTAATATCAGGTTTAGCTGTAGGTAGCTTTCTGAACGTAGTCAT
CTATCGTCTGCCGATCATGATGGAACGCAGCTGGCAGGCTGAAGCACGAATGGCATTGCAATTACCGGCAGAAAATTTTG
CCCGTTTCAATCTTTGCATACCCCCGTCAGCCTGCCCTCATTGCCAGCATAAAATTCGCTGGTGGCAAAATATACCATTG
ATAAGCTATCTTCTCTTACATGGTCGTTGTGCTGCTTGTGCAAAACCGATTAGCCCTCGCTATTTCTGTGTCGAACTGCT
TACCGGACTAGCGTTTGCCGCAGTAATATGGCGCTATGATGTAACACCAGTCGCCGCCGGTGGTCTGGTTTTGACAGCTG
CGTTGATAACATTAACATTTATCGATGCTGATACTCAGCTCTTGCCAGATCAGATTACTTTGCCATTACTGTGGCTGGGA
TTACTGTTTAATTGGTATAGTGAATTTGTATCCTTATCTGCAGCTATATGGGGAGCAGTAGCAGGCTATATGAGCTTGTG
GTCACTGTTTTGGCTATTCAAGCTCATAACCGGAAAAGATGGCATGGGTTATGGTGATTTTAAACTGCTGGCTGCTCTAG
GCGCATGGATGGGTGCTGCTGCATTACCATTAATTGTATTTATAGCTGCTATTGTTGGCATCATTGCCTCTTTGATACTC
AAAGTTGCCCGCAGTCAGCCAATGGCTTTTGGCCCGGCTCTAGCCATCTCCGGCTGGATTGTTTGGATGGCCAACAGCCA
AATTAGCCAGCTCATTCACTGGTGGTTGCAACTTTCTGGATTCGATGCATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (129-236)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-119)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	55.39	95.053	0.526
pilD	Acinetobacter baumannii D1279779	52.03	95.76	0.498
pilD	Acinetobacter nosocomialis M2	51.661	95.76	0.495
pilD	Vibrio cholerae strain A1552	49.097	97.88	0.481
pilD	Vibrio campbellii strain DS40M4	46.494	95.76	0.445