Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AB3239_RS16740 Genome accession   NZ_CP166831
Coordinates   3197699..3198343 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain TE3T-UV25     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3192699..3203343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3239_RS16705 (AB3239_16705) mrpB 3193891..3194322 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  AB3239_RS16710 (AB3239_16710) mrpC 3194322..3194663 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  AB3239_RS16715 (AB3239_16715) mrpD 3194656..3196137 (+) 1482 WP_021480494.1 Na+/H+ antiporter subunit D -
  AB3239_RS16720 (AB3239_16720) mrpE 3196143..3196619 (+) 477 WP_021480495.1 Na+/H+ antiporter subunit E -
  AB3239_RS16725 (AB3239_16725) mrpF 3196619..3196903 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  AB3239_RS16730 (AB3239_16730) mnhG 3196887..3197261 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  AB3239_RS16735 (AB3239_16735) yuxO 3197300..3197680 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  AB3239_RS16740 (AB3239_16740) comA 3197699..3198343 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  AB3239_RS16745 (AB3239_16745) comP 3198424..3200733 (-) 2310 WP_038828679.1 two-component system sensor histidine kinase ComP Regulator
  AB3239_RS16750 (AB3239_16750) comX 3200748..3200915 (-) 168 WP_038828676.1 competence pheromone ComX Regulator
  AB3239_RS16755 (AB3239_16755) comQ 3200903..3201802 (-) 900 WP_038828674.1 class 1 isoprenoid biosynthesis enzyme Regulator
  AB3239_RS16760 (AB3239_16760) degQ 3201987..3202127 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  AB3239_RS16765 (AB3239_16765) - 3202349..3202411 (+) 63 Protein_3237 hypothetical protein -
  AB3239_RS16770 (AB3239_16770) - 3202589..3202957 (+) 369 WP_038828672.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=1035552 AB3239_RS16740 WP_003220716.1 3197699..3198343(-) (comA) [Bacillus subtilis strain TE3T-UV25]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1035552 AB3239_RS16740 WP_003220716.1 3197699..3198343(-) (comA) [Bacillus subtilis strain TE3T-UV25]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment