Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   QUF19_RS15560 Genome accession   NZ_AP028067
Coordinates   3456465..3457097 (+) Length   210 a.a.
NCBI ID   WP_004729651.1    Uniprot ID   A0AAN0LME0
Organism   Vibrio sp. FE10     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3451465..3462097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUF19_RS15540 - 3453286..3453756 (+) 471 WP_065104118.1 TIGR02444 family protein -
  QUF19_RS15545 - 3453961..3454953 (+) 993 WP_286294850.1 hydrolase -
  QUF19_RS15550 - 3455064..3455276 (+) 213 WP_004729649.1 YheU family protein -
  QUF19_RS15555 - 3455354..3456223 (+) 870 WP_004729650.1 phosphoribulokinase -
  QUF19_RS15560 crp 3456465..3457097 (+) 633 WP_004729651.1 cAMP-activated global transcriptional regulator CRP Regulator
  QUF19_RS15565 - 3457282..3458073 (-) 792 WP_286294852.1 DUF1338 domain-containing protein -
  QUF19_RS15570 astD 3458347..3459804 (-) 1458 WP_012604932.1 succinylglutamate-semialdehyde dehydrogenase -
  QUF19_RS15575 astA 3459844..3460863 (-) 1020 WP_009848917.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23623.39 Da        Isoelectric Point: 7.4009

>NTDB_id=103532 QUF19_RS15560 WP_004729651.1 3456465..3457097(+) (crp) [Vibrio sp. FE10]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=103532 QUF19_RS15560 WP_004729651.1 3456465..3457097(+) (crp) [Vibrio sp. FE10]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATCGTTAAAGGTTCTGTGGCTGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGCGACTTCATCGGTGAACTTGGACTTTTCGAAGAAGAC
CAAGAGCGTACTGCGTGGGTTCGTGCTAAATCTCCTTGTGAAGTAGCTGAAATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGATATCCTGATGCGCCTTTCAGCACAAATGGCGAACCGTCTACAAGTAACTAGCCAAAAAGTTGGTG
ACTTAGCGTTCCTTGACGTAACAGGTCGTATCGCTCAAACGCTACTTAACCTAGCGAAACAGCCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAGATCGTTGGTTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTTGAAGAGCAGAACCTAATTTCTGCACACGGTAAGACTATCGTGGTATACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment