Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DYY94_RS12685 Genome accession   NZ_LT996890
Coordinates   2456724..2457326 (+) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus isolate 24117-SCV     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2451724..2462326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY94_RS12655 mreD 2452373..2452903 (+) 531 WP_001259923.1 rod shape-determining protein MreD -
  DYY94_RS12660 rplU 2453139..2453447 (+) 309 WP_000457384.1 50S ribosomal protein L21 -
  DYY94_RS12665 - 2453453..2453773 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  DYY94_RS12670 rpmA 2453785..2454069 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  DYY94_RS12675 obgE 2454950..2456242 (+) 1293 WP_000496100.1 GTPase ObgE -
  DYY94_RS12680 - 2456255..2456710 (+) 456 WP_000368902.1 ACT domain-containing protein -
  DYY94_RS12685 ruvA 2456724..2457326 (+) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  DYY94_RS12690 ruvB 2457358..2458362 (+) 1005 WP_001005769.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  DYY94_RS12695 queA 2458364..2459389 (+) 1026 WP_001019172.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  DYY94_RS12700 tgt 2459412..2460551 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  DYY94_RS12705 yajC 2460570..2460830 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=1035178 DYY94_RS12685 WP_000271547.1 2456724..2457326(+) (ruvA) [Staphylococcus aureus isolate 24117-SCV]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=1035178 DYY94_RS12685 WP_000271547.1 2456724..2457326(+) (ruvA) [Staphylococcus aureus isolate 24117-SCV]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425