Detailed information NTG1035050

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACA027_RS04185
• Genome accession: NZ_CP166730
• Coordinates: 961043..961918 (-)
• Length: 291 a.a.
• NCBI ID: WP_370681148.1
• Uniprot ID: -
• Organism: Comamonas sp. GB3 AK4-5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 956043..966918

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACA027_RS04155 (ACA027_04155)	argJ	956252..957481 (+)	1230	WP_370681142.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
ACA027_RS04160 (ACA027_04160)	-	957704..958657 (+)	954	WP_370681143.1	ATP-binding protein	-
ACA027_RS04165 (ACA027_04165)	-	958709..959209 (+)	501	WP_370681144.1	NUDIX domain-containing protein	-
ACA027_RS04170 (ACA027_04170)	-	959320..959535 (-)	216	WP_370681145.1	DNA gyrase inhibitor YacG	-
ACA027_RS04175 (ACA027_04175)	zapD	959575..960330 (-)	756	WP_370681146.1	cell division protein ZapD	-
ACA027_RS04180 (ACA027_04180)	coaE	960432..961043 (-)	612	WP_370681147.1	dephospho-CoA kinase	-
ACA027_RS04185 (ACA027_04185)	pilD	961043..961918 (-)	876	WP_370681148.1	A24 family peptidase	Machinery gene
ACA027_RS04190 (ACA027_04190)	pilC	961918..963159 (-)	1242	WP_370681149.1	type II secretion system F family protein	Machinery gene
ACA027_RS04195 (ACA027_04195)	pilB	963209..964948 (-)	1740	WP_370681150.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACA027_RS04205 (ACA027_04205)	-	965200..966129 (-)	930	WP_370682507.1	polyprenyl synthetase family protein	-
ACA027_RS04210 (ACA027_04210)	rplU	966346..966657 (+)	312	WP_370682508.1	50S ribosomal protein L21	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 31122.60 Da
• Isoelectric Point: 7.1135

>NTDB_id=1035050 ACA027_RS04185 WP_370681148.1 961043..961918(-) (pilD) [Comamonas sp. GB3 AK4-5]
MALHFGMEAWLAALFGLVIGSFLNVVILRLPRQMEQDWAAEHEAAIRGAAHVAGSGRAPAYGVTLSTPRSHCPHCGHTIY
WYQNIPVLSYLVLRGHCAHCKARISMRYPLVELATAALFALCVARWGTNPTGLAWCGFSAALLTLALIDWDTTLLPDSIT
LPLLWAGLLASALQWTTTPLPDAVYGAVAGYLSLWLVYWAFKLATGKEGMGYGDFKLFAALGAWLGWQALVPVILIASVL
GLIAGLALQFTGSLREGGYIPFGPFLAGAGCAAMVFGSDMMVDGLFAFAGM

Nucleotide

• Length: 876 bp

>NTDB_id=1035050 ACA027_RS04185 WP_370681148.1 961043..961918(-) (pilD) [Comamonas sp. GB3 AK4-5]
ATGGCGCTGCACTTTGGCATGGAAGCCTGGCTGGCCGCCCTGTTCGGCCTGGTGATCGGAAGTTTTCTGAACGTCGTCAT
CCTCCGCCTGCCGCGCCAGATGGAACAGGACTGGGCCGCCGAGCATGAGGCCGCCATACGGGGTGCTGCGCATGTCGCGG
GGTCTGGTCGAGCGCCCGCCTACGGTGTCACCCTGTCCACCCCGCGATCGCATTGCCCGCACTGCGGACACACCATCTAC
TGGTACCAGAACATTCCCGTCCTCAGCTATCTGGTGCTGCGCGGGCACTGCGCCCACTGCAAGGCCCGCATCAGCATGCG
CTATCCGCTGGTGGAGCTGGCCACTGCGGCCTTGTTTGCCCTGTGCGTGGCGCGCTGGGGTACCAACCCCACGGGCCTGG
CCTGGTGCGGCTTCAGCGCTGCACTGCTGACGCTGGCACTCATAGACTGGGACACCACCTTGCTGCCCGACAGCATCACC
CTGCCCCTGCTGTGGGCCGGCTTGCTGGCCAGTGCGCTGCAGTGGACCACCACCCCACTGCCCGATGCCGTGTATGGCGC
GGTCGCGGGCTATCTGTCGCTGTGGCTGGTGTACTGGGCCTTCAAACTGGCCACCGGCAAGGAGGGCATGGGCTATGGCG
ACTTCAAGCTCTTTGCCGCCCTGGGTGCCTGGCTGGGCTGGCAGGCCCTGGTGCCCGTCATCCTCATCGCCTCGGTGCTG
GGTCTCATCGCCGGTCTGGCGCTGCAATTCACCGGCAGCTTGCGCGAAGGCGGTTACATTCCTTTTGGCCCCTTTTTGGC
AGGGGCCGGCTGCGCAGCCATGGTGTTCGGTTCCGACATGATGGTGGACGGCCTGTTCGCTTTTGCAGGAATGTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-125)

• Type IV leader peptidase family (Peptidase_A24) (139-246)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.903	95.189	0.485
pilD	Vibrio campbellii strain DS40M4	47.059	93.471	0.44
pilD	Neisseria gonorrhoeae MS11	46.768	90.378	0.423
pilD	Acinetobacter baumannii D1279779	45.387	93.127	0.423
pilD	Acinetobacter nosocomialis M2	45.387	93.127	0.423