Detailed information NTG1034802

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABK045_RS20690
• Genome accession: NZ_CP166498
• Coordinates: 4444035..4445408 (+)
• Length: 457 a.a.
• NCBI ID: WP_049471425.1
• Uniprot ID: A0AB34TH98
• Organism: Stenotrophomonas pavanii strain 9978
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4439035..4450408

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABK045_RS20675 (ABK045_20690)	sucD	4439890..4440765 (-)	876	WP_005418610.1	succinate--CoA ligase subunit alpha	-
ABK045_RS20680 (ABK045_20695)	sucC	4440790..4441959 (-)	1170	WP_005418614.1	ADP-forming succinate--CoA ligase subunit beta	-
ABK045_RS20685 (ABK045_20700)	-	4442367..4443980 (+)	1614	WP_049471427.1	PAS domain-containing sensor histidine kinase	-
ABK045_RS20690 (ABK045_20705)	pilR	4444035..4445408 (+)	1374	WP_049471425.1	sigma-54 dependent transcriptional regulator	Regulator
ABK045_RS20695 (ABK045_20710)	pilB	4445503..4447233 (-)	1731	WP_053506935.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABK045_RS20700 (ABK045_20715)	-	4447394..4448227 (-)	834	WP_064239075.1	sterol desaturase family protein	-
ABK045_RS20705 (ABK045_20720)	pilA/pilAI	4448422..4448850 (-)	429	WP_149901976.1	pilin	Machinery gene

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49557.84 Da
• Isoelectric Point: 6.2985

>NTDB_id=1034802 ABK045_RS20690 WP_049471425.1 4444035..4445408(+) (pilR) [Stenotrophomonas pavanii strain 9978]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAHHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIAVLRGLVKHALELNNTERPAPGPAAEQGARLLGDSPAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAATEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELRVPPLRERRQDLPE
LAASVLARLARSHGRPTPLLAPSALDALAQYAFPGNVRELENILERALALAEEDCIGADDLRLPQHAPRTPGSAAPAEAV
VDLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=1034802 ABK045_RS20690 WP_049471425.1 4444035..4445408(+) (pilR) [Stenotrophomonas pavanii strain 9978]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTACTGACGCTCGGCCGCAT
GGGGCTGCGCATCAGTACGGCAGCCAACCTTGCCGAAGCGCGCGAACTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCGGACGGCAACGGCATCGAGCTGGTCAGCGAGATCGCCCACCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCGCCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAACTGAACAACACCGAGCGCCCCGCGCCCGGCCCCGCCG
CCGAACAGGGCGCACGCCTGCTCGGCGATTCGCCGGCCATGGACGTGCTGCGTACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGCGAATCCGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGCCCAGGGCGCCCG
CGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGGCGAGCTGATGGAGAGTGAGTTCTTCGGCCACCGCA
AGGGCAGCTTCAGCGGCGCCCACGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTCGACGAA
GTTGCCGAGCTGCCCCTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAGAAGTCGGTGCGCGCGGTGGGCGCTGC
CACCGAAGAACCGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGAACTGGTCGAGGACGGGCGCTTCC
GCCACGACCTCTACTACCGCATCAACGTGATCGAACTGAGGGTGCCGCCGCTGCGCGAGCGTCGCCAGGACCTGCCGGAA
CTGGCCGCATCGGTGCTAGCTCGGCTGGCCCGCAGCCATGGCCGCCCGACGCCGCTGCTGGCGCCGTCGGCGTTGGACGC
GCTGGCCCAGTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTGGAACGCGCGCTGGCACTGGCCGAGGAAG
ATTGCATCGGCGCCGACGACCTGCGCCTGCCGCAGCATGCCCCGCGCACGCCCGGCAGCGCAGCGCCCGCCGAAGCCGTG
GTGGACCTGCAACCCGGCAGCGCCGCCCTGCCCTCGTACATCGAACAACTCGAGCGCAGCGCCATCCAGCGCGCGCTGGA
AGAAAACCGCTGGAACAAGACCCGCACCGCCGCGCAGCTGGGCATCACCTTCCGCGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (141-306)

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.719	99.781	0.626
pilR	Acinetobacter baumannii strain A118	47.948	100	0.486