Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AB6K15_RS13090 Genome accession   NZ_CP166492
Coordinates   2693781..2694470 (+) Length   229 a.a.
NCBI ID   WP_197200179.1    Uniprot ID   -
Organism   Bacillus velezensis strain BC248L1-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2688781..2699470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6K15_RS13065 (AB6K15_13065) degS 2689064..2690227 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  AB6K15_RS13070 (AB6K15_13070) degU 2690304..2690993 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB6K15_RS13075 (AB6K15_13075) - 2691091..2691939 (+) 849 WP_094031329.1 DegV family protein -
  AB6K15_RS13080 (AB6K15_13080) comFA 2692048..2693433 (+) 1386 WP_099320008.1 DEAD/DEAH box helicase Machinery gene
  AB6K15_RS13085 (AB6K15_13085) - 2693491..2693775 (+) 285 WP_007407481.1 late competence development ComFB family protein -
  AB6K15_RS13090 (AB6K15_13090) comFC 2693781..2694470 (+) 690 WP_197200179.1 phosphoribosyltransferase family protein Machinery gene
  AB6K15_RS13095 (AB6K15_13095) - 2694544..2694963 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  AB6K15_RS13100 (AB6K15_13100) flgM 2695033..2695299 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB6K15_RS13105 (AB6K15_13105) - 2695314..2695796 (+) 483 WP_003151394.1 flagellar protein FlgN -
  AB6K15_RS13110 (AB6K15_13110) flgK 2695812..2697329 (+) 1518 WP_025285351.1 flagellar hook-associated protein FlgK -
  AB6K15_RS13115 (AB6K15_13115) flgL 2697341..2698258 (+) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  AB6K15_RS13120 (AB6K15_13120) - 2698350..2698919 (+) 570 WP_007407476.1 DUF6470 family protein -
  AB6K15_RS13125 (AB6K15_13125) fliW 2698949..2699380 (+) 432 WP_007407475.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25257.89 Da        Isoelectric Point: 8.0779

>NTDB_id=1034755 AB6K15_RS13090 WP_197200179.1 2693781..2694470(+) (comFC) [Bacillus velezensis strain BC248L1-1]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTVGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1034755 AB6K15_RS13090 WP_197200179.1 2693781..2694470(+) (comFC) [Bacillus velezensis strain BC248L1-1]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAACTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGTGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment