Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AB6K15_RS13070 Genome accession   NZ_CP166492
Coordinates   2690304..2690993 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain BC248L1-1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2685304..2695993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6K15_RS13050 (AB6K15_13050) - 2685779..2686855 (+) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  AB6K15_RS13055 (AB6K15_13055) - 2686954..2688189 (-) 1236 WP_025285355.1 LCP family protein -
  AB6K15_RS13060 (AB6K15_13060) - 2688194..2688841 (-) 648 WP_007407485.1 YigZ family protein -
  AB6K15_RS13065 (AB6K15_13065) degS 2689064..2690227 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  AB6K15_RS13070 (AB6K15_13070) degU 2690304..2690993 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB6K15_RS13075 (AB6K15_13075) - 2691091..2691939 (+) 849 WP_094031329.1 DegV family protein -
  AB6K15_RS13080 (AB6K15_13080) comFA 2692048..2693433 (+) 1386 WP_099320008.1 DEAD/DEAH box helicase Machinery gene
  AB6K15_RS13085 (AB6K15_13085) - 2693491..2693775 (+) 285 WP_007407481.1 late competence development ComFB family protein -
  AB6K15_RS13090 (AB6K15_13090) comFC 2693781..2694470 (+) 690 WP_197200179.1 phosphoribosyltransferase family protein Machinery gene
  AB6K15_RS13095 (AB6K15_13095) - 2694544..2694963 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  AB6K15_RS13100 (AB6K15_13100) flgM 2695033..2695299 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB6K15_RS13105 (AB6K15_13105) - 2695314..2695796 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1034753 AB6K15_RS13070 WP_003219701.1 2690304..2690993(+) (degU) [Bacillus velezensis strain BC248L1-1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1034753 AB6K15_RS13070 WP_003219701.1 2690304..2690993(+) (degU) [Bacillus velezensis strain BC248L1-1]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment