Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AB6K15_RS13080 Genome accession   NZ_CP166492
Coordinates   2692048..2693433 (+) Length   461 a.a.
NCBI ID   WP_099320008.1    Uniprot ID   -
Organism   Bacillus velezensis strain BC248L1-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2687048..2698433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6K15_RS13060 (AB6K15_13060) - 2688194..2688841 (-) 648 WP_007407485.1 YigZ family protein -
  AB6K15_RS13065 (AB6K15_13065) degS 2689064..2690227 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  AB6K15_RS13070 (AB6K15_13070) degU 2690304..2690993 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB6K15_RS13075 (AB6K15_13075) - 2691091..2691939 (+) 849 WP_094031329.1 DegV family protein -
  AB6K15_RS13080 (AB6K15_13080) comFA 2692048..2693433 (+) 1386 WP_099320008.1 DEAD/DEAH box helicase Machinery gene
  AB6K15_RS13085 (AB6K15_13085) - 2693491..2693775 (+) 285 WP_007407481.1 late competence development ComFB family protein -
  AB6K15_RS13090 (AB6K15_13090) comFC 2693781..2694470 (+) 690 WP_197200179.1 phosphoribosyltransferase family protein Machinery gene
  AB6K15_RS13095 (AB6K15_13095) - 2694544..2694963 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  AB6K15_RS13100 (AB6K15_13100) flgM 2695033..2695299 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB6K15_RS13105 (AB6K15_13105) - 2695314..2695796 (+) 483 WP_003151394.1 flagellar protein FlgN -
  AB6K15_RS13110 (AB6K15_13110) flgK 2695812..2697329 (+) 1518 WP_025285351.1 flagellar hook-associated protein FlgK -
  AB6K15_RS13115 (AB6K15_13115) flgL 2697341..2698258 (+) 918 WP_007407477.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52775.27 Da        Isoelectric Point: 10.1560

>NTDB_id=1034754 AB6K15_RS13080 WP_099320008.1 2692048..2693433(+) (comFA) [Bacillus velezensis strain BC248L1-1]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYYWNQAYENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVYAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1034754 AB6K15_RS13080 WP_099320008.1 2692048..2693433(+) (comFA) [Bacillus velezensis strain BC248L1-1]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGACCAGCGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTATTGGAATCAGGCCTATGAAAACAG
CTGGGAACCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCTCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACCGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAATGTAAGGGCAGAAGGCGTTTATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(329-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623
  comFA Latilactobacillus sakei subsp. sakei 23K

39.713

90.672

0.36

Multiple sequence alignment