Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AB6911_RS18505 Genome accession   NZ_CP166481
Coordinates   3609015..3609704 (-) Length   229 a.a.
NCBI ID   WP_003326715.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain globigii     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3604015..3614704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6911_RS18470 (AB6911_18440) - 3604194..3604676 (-) 483 WP_003326723.1 flagellar protein FlgN -
  AB6911_RS18475 (AB6911_18445) flgM 3604692..3604952 (-) 261 WP_003326722.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB6911_RS18480 (AB6911_18450) - 3605032..3605451 (-) 420 WP_003326721.1 TIGR03826 family flagellar region protein -
  AB6911_RS18485 (AB6911_18455) comFC 3605523..3606245 (-) 723 WP_034717733.1 amidophosphoribosyltransferase Machinery gene
  AB6911_RS18490 (AB6911_18460) - 3606209..3606505 (-) 297 WP_003326719.1 late competence development ComFB family protein -
  AB6911_RS18495 (AB6911_18465) comFA 3606562..3607959 (-) 1398 WP_003326717.1 ATP-dependent helicase ComFA Machinery gene
  AB6911_RS18500 (AB6911_18470) - 3608066..3608908 (-) 843 WP_003326716.1 DegV family protein -
  AB6911_RS18505 (AB6911_18475) degU 3609015..3609704 (-) 690 WP_003326715.1 two-component system response regulator DegU Regulator
  AB6911_RS18510 (AB6911_18480) degS 3609781..3610944 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator
  AB6911_RS18515 (AB6911_18485) - 3611162..3611815 (+) 654 WP_003326713.1 YigZ family protein -
  AB6911_RS18520 (AB6911_18490) - 3611815..3613071 (+) 1257 WP_003326712.1 LCP family protein -
  AB6911_RS18525 (AB6911_18495) - 3613161..3614237 (-) 1077 WP_003326711.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25867.51 Da        Isoelectric Point: 5.5393

>NTDB_id=1034699 AB6911_RS18505 WP_003326715.1 3609015..3609704(-) (degU) [Bacillus atrophaeus strain globigii]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVENHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1034699 AB6911_RS18505 WP_003326715.1 3609015..3609704(-) (degU) [Bacillus atrophaeus strain globigii]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAATTATTTCGTGAAGGTGTTAAGCGAATATTAGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGTATTGTTGAGCACTATCATCCTGACGTAGTCA
TTATGGATATTAATATGCCGAATGTAAATGGTGTGGAAGCTACTAAGCAGCTTGTAGAGCTGTATCCAGAATCAAAAGTA
ATTATCTTGTCTATTCATGATGATGAAAATTATGTGACACATGCCTTAAAAACAGGCGCAAGAGGTTATCTGCTGAAAGA
AATGGACGCTGATACTTTAATCGAAGCAGTTAAAGTGGTGGCGGAAGGCGGTTCATATCTCCATCCGAAGGTCACTCACA
ATCTTGTAAACGAGTTTCGACGTCTTGCAACAAGCGGAGTTTCTGCCCATCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCATTACATATTCTAACCAGGCGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGTAAAAGCAACCGCGGTATAGG
CGAATCACTATTTATCAGTGAAAAAACAGTCGAAAATCATGTCAGCAATATTTTGCAAAAAATGAACGTAAACGATCGGA
CGCAAGCAGTTGTCGTCGCGATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment