Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AB6911_RS18495 Genome accession   NZ_CP166481
Coordinates   3606562..3607959 (-) Length   465 a.a.
NCBI ID   WP_003326717.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain globigii     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3601562..3612959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6911_RS18460 (AB6911_18430) flgL 3601746..3602642 (-) 897 WP_003326725.1 flagellar hook-associated protein FlgL -
  AB6911_RS18465 (AB6911_18435) flgK 3602654..3604177 (-) 1524 WP_003326724.1 flagellar hook-associated protein FlgK -
  AB6911_RS18470 (AB6911_18440) - 3604194..3604676 (-) 483 WP_003326723.1 flagellar protein FlgN -
  AB6911_RS18475 (AB6911_18445) flgM 3604692..3604952 (-) 261 WP_003326722.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB6911_RS18480 (AB6911_18450) - 3605032..3605451 (-) 420 WP_003326721.1 TIGR03826 family flagellar region protein -
  AB6911_RS18485 (AB6911_18455) comFC 3605523..3606245 (-) 723 WP_034717733.1 amidophosphoribosyltransferase Machinery gene
  AB6911_RS18490 (AB6911_18460) - 3606209..3606505 (-) 297 WP_003326719.1 late competence development ComFB family protein -
  AB6911_RS18495 (AB6911_18465) comFA 3606562..3607959 (-) 1398 WP_003326717.1 ATP-dependent helicase ComFA Machinery gene
  AB6911_RS18500 (AB6911_18470) - 3608066..3608908 (-) 843 WP_003326716.1 DegV family protein -
  AB6911_RS18505 (AB6911_18475) degU 3609015..3609704 (-) 690 WP_003326715.1 two-component system response regulator DegU Regulator
  AB6911_RS18510 (AB6911_18480) degS 3609781..3610944 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator
  AB6911_RS18515 (AB6911_18485) - 3611162..3611815 (+) 654 WP_003326713.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53243.85 Da        Isoelectric Point: 10.0443

>NTDB_id=1034698 AB6911_RS18495 WP_003326717.1 3606562..3607959(-) (comFA) [Bacillus atrophaeus strain globigii]
MQTELEKKPLFSADLQQFLHHRHLLRTEIPFSEELINWHIEHGFISAEKSIIKNKKGYLCNRCGQNDKRYFSSYWSCSDE
KNQMYCRSCVMMGRVSENIFLYSWIKEVEASWQPIKLTWEGKLSLGQQKAADILIDAITKREELLIWAVCGAGKTEILFP
GIEFALNQGFRVCIATPRTDVVLELTPRLKTAFQTTKVSALYGGSEDKGSLSPLMISTTHQLLRYKEAFDVIIIDEVDAF
PYSADQTLQFAVQKARKKNSTLIYLSATPSKELKKKAHIGKLKSVRIPARHHRKPLPEPRFCWCGNWQKKLARSKIPKQV
KIWVEQHVKEGRPVFLFVPSVSVLEKVTACFAGMRYRTAGVHAEDKNRKEKVQQFRDGRLDVLITTTILERGVTIPMVQT
GVLGAESPIFTESALVQIAGRTGRHKKYAQGDVIYFHFGKTKSMIDARNHINEMNKLARKNELID

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=1034698 AB6911_RS18495 WP_003326717.1 3606562..3607959(-) (comFA) [Bacillus atrophaeus strain globigii]
ATGCAGACTGAGTTGGAAAAGAAACCTTTATTCTCTGCTGATCTGCAGCAGTTCCTTCATCACCGCCACTTGCTTAGAAC
TGAAATCCCATTCTCTGAGGAACTTATCAACTGGCATATTGAGCATGGTTTTATTTCCGCTGAAAAATCAATCATCAAAA
ATAAAAAGGGTTATTTGTGTAACAGGTGCGGCCAAAATGATAAGCGGTATTTTTCCTCCTACTGGTCATGCTCAGATGAA
AAAAATCAAATGTATTGCCGTTCGTGTGTCATGATGGGAAGAGTAAGCGAGAACATTTTCTTATATTCATGGATAAAGGA
GGTGGAAGCAAGCTGGCAGCCTATAAAGCTTACTTGGGAAGGTAAACTCTCTCTTGGACAGCAAAAAGCGGCGGATATTT
TAATTGACGCGATAACTAAAAGGGAAGAGCTTCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACCGAAATATTATTCCCG
GGCATTGAGTTTGCGTTAAATCAGGGATTTCGTGTATGTATTGCAACACCGCGCACCGATGTCGTACTAGAGCTTACTCC
AAGGCTGAAAACCGCCTTTCAGACCACAAAGGTCTCAGCCCTTTACGGAGGGAGTGAAGATAAAGGGAGCTTGTCCCCGC
TGATGATTTCAACGACACATCAGCTATTACGTTACAAAGAAGCATTTGACGTCATCATCATAGACGAAGTTGATGCTTTT
CCTTATTCTGCTGATCAAACTCTCCAGTTTGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCATTTATTTAAGTGC
AACACCTTCCAAAGAATTAAAAAAGAAAGCGCATATAGGGAAGTTAAAATCGGTTCGCATACCCGCAAGACATCACCGGA
AACCATTGCCTGAACCACGTTTTTGCTGGTGCGGAAACTGGCAAAAAAAATTAGCCAGAAGCAAAATTCCGAAACAGGTG
AAAATATGGGTAGAACAGCATGTGAAAGAAGGCAGACCTGTTTTTTTATTTGTGCCGTCTGTTTCCGTTTTAGAGAAGGT
TACTGCCTGTTTCGCCGGCATGAGATATCGGACAGCGGGTGTGCATGCGGAAGATAAGAACCGTAAAGAGAAAGTGCAGC
AATTCAGGGACGGCCGGCTTGATGTATTAATCACAACGACCATATTAGAAAGAGGAGTTACTATTCCAATGGTGCAGACT
GGCGTATTGGGAGCTGAATCGCCTATATTTACTGAGAGCGCACTCGTCCAAATCGCCGGGAGGACAGGGCGGCATAAAAA
ATATGCTCAGGGTGACGTCATATATTTTCACTTTGGAAAAACAAAGAGTATGATAGATGCCAGAAATCATATAAACGAAA
TGAATAAATTGGCAAGAAAAAACGAATTAATAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-425)

Type III restriction enzyme, res subunit (ResIII)

(123-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

76.774

100

0.768

Multiple sequence alignment