Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   AB6911_RS13430 Genome accession   NZ_CP166481
Coordinates   2626395..2627465 (-) Length   356 a.a.
NCBI ID   WP_003325427.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain globigii     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2621395..2632465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6911_RS13385 (AB6911_13365) tapA 2621930..2622631 (-) 702 WP_003325437.1 amyloid fiber anchoring/assembly protein TapA -
  AB6911_RS13390 (AB6911_13370) - 2622893..2623216 (+) 324 WP_003325436.1 DUF3889 domain-containing protein -
  AB6911_RS13395 (AB6911_13375) - 2623263..2623442 (-) 180 WP_003325435.1 YqzE family protein -
  AB6911_RS13400 (AB6911_13380) comGG 2623512..2623886 (-) 375 WP_003325434.1 competence type IV pilus minor pilin ComGG Machinery gene
  AB6911_RS13405 (AB6911_13385) comGF 2623887..2624282 (-) 396 WP_309484978.1 competence type IV pilus minor pilin ComGF Machinery gene
  AB6911_RS13410 (AB6911_13390) comGE 2624296..2624643 (-) 348 WP_003325432.1 competence type IV pilus minor pilin ComGE Machinery gene
  AB6911_RS13415 (AB6911_13395) comGD 2624627..2625067 (-) 441 WP_003325431.1 competence type IV pilus minor pilin ComGD Machinery gene
  AB6911_RS13420 (AB6911_13400) comGC 2625057..2625356 (-) 300 WP_003325429.1 competence type IV pilus major pilin ComGC Machinery gene
  AB6911_RS13425 (AB6911_13405) comGB 2625371..2626408 (-) 1038 WP_003325428.1 competence type IV pilus assembly protein ComGB Machinery gene
  AB6911_RS13430 (AB6911_13410) comGA 2626395..2627465 (-) 1071 WP_003325427.1 competence type IV pilus ATPase ComGA Machinery gene
  AB6911_RS13435 (AB6911_13415) - 2627882..2628835 (-) 954 WP_003325425.1 magnesium transporter CorA family protein -
  AB6911_RS13440 (AB6911_13420) - 2628957..2630305 (+) 1349 Protein_2608 hemolysin family protein -
  AB6911_RS13445 (AB6911_13425) - 2630372..2631223 (-) 852 WP_003325423.1 STAS domain-containing protein -
  AB6911_RS13455 (AB6911_13435) - 2631482..2631862 (-) 381 WP_003325422.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  AB6911_RS13460 (AB6911_13440) - 2632100..2632345 (+) 246 WP_003325421.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40499.88 Da        Isoelectric Point: 9.5686

>NTDB_id=1034678 AB6911_RS13430 WP_003325427.1 2626395..2627465(-) (comGA) [Bacillus atrophaeus strain globigii]
MDTIEKTSRTLIEEAYSVKASDIHIVPREQDALIHFRIDHALLKKRTMKKEECVRLISHFKFLSAMDIGERRKPQSGSLS
LKLKKGTVYLRMSTLPTINDESLVIRVLPQHNIPAIERLSLFPKTGATLLSFLKHSHGLIIFTGPTGSGKSTTLYSLVQY
AKKHFNRNIITLEDPVETRDQDVLQVQVNEKAGITYSAGLKAILRHDPDMIVLGEIRDAETAKIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGVNMNEIEQTAIAIVAQRLVDLTCPFCEKGCSSVYCRITRDVRRATIYELLYGKNLQQCIQEARGE
RANYQYRTLRQIIRKGIALGYLTTNNYDRWVYHEED

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1034678 AB6911_RS13430 WP_003325427.1 2626395..2627465(-) (comGA) [Bacillus atrophaeus strain globigii]
TTGGATACGATAGAAAAAACTAGCAGAACATTAATTGAAGAGGCATATTCCGTGAAGGCCTCGGATATTCACATTGTACC
AAGGGAGCAAGATGCTTTGATCCATTTTCGGATTGACCATGCGTTGCTGAAGAAGCGGACAATGAAAAAGGAAGAGTGCG
TTCGGCTCATTTCCCATTTTAAATTTCTGTCAGCCATGGATATAGGAGAAAGGCGGAAGCCACAAAGTGGTTCACTTTCT
TTAAAGCTTAAAAAAGGGACAGTTTATCTCAGAATGTCGACACTTCCTACGATTAATGATGAAAGCCTCGTGATCAGAGT
TTTGCCTCAGCATAATATTCCTGCGATCGAAAGACTGTCCCTGTTCCCAAAGACAGGCGCCACGCTGCTATCCTTTTTAA
AGCACTCCCACGGCCTCATTATTTTTACCGGTCCGACTGGCTCAGGGAAATCTACCACCCTATATTCACTGGTTCAATAT
GCAAAAAAGCATTTCAACCGAAATATTATCACTCTCGAAGATCCTGTGGAAACAAGAGATCAGGATGTCTTGCAGGTACA
GGTGAATGAAAAAGCCGGCATTACGTACTCAGCGGGCCTGAAGGCGATTTTGCGCCATGATCCAGACATGATTGTTCTGG
GGGAAATCAGAGATGCTGAAACAGCAAAAATCGCCGTGCGGGCTGCTATGACAGGCCATTTGGTATTAACAAGCCTGCAC
ACAAGAGATGCCAAGGGCGCCATTTACAGACTGCTTGAATTCGGAGTAAATATGAATGAAATAGAGCAAACAGCGATTGC
GATAGTAGCCCAGCGATTAGTCGACTTAACCTGTCCATTTTGTGAAAAAGGCTGTTCCTCTGTTTATTGCCGGATTACAC
GTGATGTAAGGCGAGCGACCATTTATGAGCTTCTTTACGGGAAAAATCTTCAGCAATGTATACAAGAAGCTAGAGGAGAA
CGGGCCAATTATCAGTACCGAACCTTACGGCAGATTATCAGAAAAGGAATCGCGCTTGGCTATCTAACGACGAATAATTA
CGACCGGTGGGTTTATCATGAAGAGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

87.36

100

0.874

Multiple sequence alignment