Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | AB6911_RS13425 | Genome accession | NZ_CP166481 |
| Coordinates | 2625371..2626408 (-) | Length | 345 a.a. |
| NCBI ID | WP_003325428.1 | Uniprot ID | - |
| Organism | Bacillus atrophaeus strain globigii | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2620371..2631408
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB6911_RS13375 (AB6911_13355) | tasA | 2620528..2621310 (-) | 783 | WP_003325439.1 | biofilm matrix protein TasA | - |
| AB6911_RS13380 (AB6911_13360) | sipW | 2621374..2621946 (-) | 573 | WP_010789195.1 | signal peptidase I SipW | - |
| AB6911_RS13385 (AB6911_13365) | tapA | 2621930..2622631 (-) | 702 | WP_003325437.1 | amyloid fiber anchoring/assembly protein TapA | - |
| AB6911_RS13390 (AB6911_13370) | - | 2622893..2623216 (+) | 324 | WP_003325436.1 | DUF3889 domain-containing protein | - |
| AB6911_RS13395 (AB6911_13375) | - | 2623263..2623442 (-) | 180 | WP_003325435.1 | YqzE family protein | - |
| AB6911_RS13400 (AB6911_13380) | comGG | 2623512..2623886 (-) | 375 | WP_003325434.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| AB6911_RS13405 (AB6911_13385) | comGF | 2623887..2624282 (-) | 396 | WP_309484978.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| AB6911_RS13410 (AB6911_13390) | comGE | 2624296..2624643 (-) | 348 | WP_003325432.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| AB6911_RS13415 (AB6911_13395) | comGD | 2624627..2625067 (-) | 441 | WP_003325431.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| AB6911_RS13420 (AB6911_13400) | comGC | 2625057..2625356 (-) | 300 | WP_003325429.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| AB6911_RS13425 (AB6911_13405) | comGB | 2625371..2626408 (-) | 1038 | WP_003325428.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| AB6911_RS13430 (AB6911_13410) | comGA | 2626395..2627465 (-) | 1071 | WP_003325427.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AB6911_RS13435 (AB6911_13415) | - | 2627882..2628835 (-) | 954 | WP_003325425.1 | magnesium transporter CorA family protein | - |
| AB6911_RS13440 (AB6911_13420) | - | 2628957..2630305 (+) | 1349 | Protein_2608 | hemolysin family protein | - |
| AB6911_RS13445 (AB6911_13425) | - | 2630372..2631223 (-) | 852 | WP_003325423.1 | STAS domain-containing protein | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 40126.37 Da Isoelectric Point: 9.7517
>NTDB_id=1034677 AB6911_RS13425 WP_003325428.1 2625371..2626408(-) (comGB) [Bacillus atrophaeus strain globigii]
MKRIKKSWPINDQANLLNRLGDMTENGYNLLDGLRLMELQMNKRQRTEMSAAVNRLREGEPFYQVLQALAFHKEAVSICY
LAEMHGELSVAMRQSGGLLERKLTQVNQLKKVIRYPIFLIFTVFVMFYILQAVIIPQFSGVYQSMNMETSRTTAVIFAFF
QHVHYAVIGFVLLALGAALYYWFGFKKKSPADKMLFFVRIPILGRLVILFNSYFFSLQLSSLLKSGLSIYDSLKAFKEQS
FLPFYRQEAEQIINKLRAGESIDRALYKHPCYENDFCEVVLHGQLSGQLHRELFTYSQFLMDRLERKVEKWTGILQPVIY
GIVAGMILIVYLSMLLPMYQMMNQL
MKRIKKSWPINDQANLLNRLGDMTENGYNLLDGLRLMELQMNKRQRTEMSAAVNRLREGEPFYQVLQALAFHKEAVSICY
LAEMHGELSVAMRQSGGLLERKLTQVNQLKKVIRYPIFLIFTVFVMFYILQAVIIPQFSGVYQSMNMETSRTTAVIFAFF
QHVHYAVIGFVLLALGAALYYWFGFKKKSPADKMLFFVRIPILGRLVILFNSYFFSLQLSSLLKSGLSIYDSLKAFKEQS
FLPFYRQEAEQIINKLRAGESIDRALYKHPCYENDFCEVVLHGQLSGQLHRELFTYSQFLMDRLERKVEKWTGILQPVIY
GIVAGMILIVYLSMLLPMYQMMNQL
Nucleotide
Download Length: 1038 bp
>NTDB_id=1034677 AB6911_RS13425 WP_003325428.1 2625371..2626408(-) (comGB) [Bacillus atrophaeus strain globigii]
ATGAAGAGGATTAAAAAAAGCTGGCCGATAAACGATCAAGCTAATTTGCTAAACAGACTCGGTGACATGACAGAAAACGG
ATACAATCTTCTGGATGGATTACGGTTAATGGAACTGCAAATGAATAAGCGTCAGCGTACGGAAATGTCTGCTGCTGTAA
ATCGTTTACGAGAGGGGGAACCATTCTATCAGGTTTTGCAGGCTTTGGCTTTCCACAAGGAAGCCGTAAGCATTTGTTAT
TTAGCAGAAATGCATGGAGAATTGTCCGTTGCTATGAGGCAAAGCGGAGGGCTGTTGGAAAGGAAATTAACACAGGTCAA
TCAGCTGAAAAAAGTCATCCGTTATCCGATTTTCCTGATCTTCACTGTCTTTGTGATGTTTTATATCCTGCAAGCTGTCA
TCATCCCGCAATTTTCAGGAGTTTATCAGTCCATGAATATGGAAACCTCACGCACAACCGCTGTTATATTCGCTTTTTTT
CAGCACGTTCATTATGCAGTGATTGGTTTTGTCTTGCTTGCTCTCGGAGCGGCACTCTATTACTGGTTTGGATTTAAGAA
GAAGTCCCCGGCAGACAAAATGCTCTTTTTTGTACGAATACCCATACTCGGAAGACTTGTCATTTTATTTAACAGCTACT
TTTTTTCTTTGCAGCTCAGCAGCCTATTAAAGTCTGGACTGTCTATTTACGACAGCCTTAAGGCCTTTAAAGAGCAATCG
TTCCTCCCTTTTTACCGTCAGGAGGCAGAACAAATCATTAACAAATTAAGGGCTGGAGAGTCCATAGATAGAGCTCTGTA
TAAACACCCATGCTATGAAAATGACTTTTGTGAAGTGGTGCTGCACGGCCAATTAAGCGGGCAGTTGCATCGTGAACTAT
TCACCTACAGCCAGTTTTTAATGGACCGGCTGGAGCGAAAGGTTGAAAAATGGACGGGAATCCTTCAGCCCGTCATCTAC
GGTATTGTTGCCGGAATGATTTTAATTGTGTATTTGTCGATGCTTTTGCCTATGTATCAGATGATGAATCAATTGTAG
ATGAAGAGGATTAAAAAAAGCTGGCCGATAAACGATCAAGCTAATTTGCTAAACAGACTCGGTGACATGACAGAAAACGG
ATACAATCTTCTGGATGGATTACGGTTAATGGAACTGCAAATGAATAAGCGTCAGCGTACGGAAATGTCTGCTGCTGTAA
ATCGTTTACGAGAGGGGGAACCATTCTATCAGGTTTTGCAGGCTTTGGCTTTCCACAAGGAAGCCGTAAGCATTTGTTAT
TTAGCAGAAATGCATGGAGAATTGTCCGTTGCTATGAGGCAAAGCGGAGGGCTGTTGGAAAGGAAATTAACACAGGTCAA
TCAGCTGAAAAAAGTCATCCGTTATCCGATTTTCCTGATCTTCACTGTCTTTGTGATGTTTTATATCCTGCAAGCTGTCA
TCATCCCGCAATTTTCAGGAGTTTATCAGTCCATGAATATGGAAACCTCACGCACAACCGCTGTTATATTCGCTTTTTTT
CAGCACGTTCATTATGCAGTGATTGGTTTTGTCTTGCTTGCTCTCGGAGCGGCACTCTATTACTGGTTTGGATTTAAGAA
GAAGTCCCCGGCAGACAAAATGCTCTTTTTTGTACGAATACCCATACTCGGAAGACTTGTCATTTTATTTAACAGCTACT
TTTTTTCTTTGCAGCTCAGCAGCCTATTAAAGTCTGGACTGTCTATTTACGACAGCCTTAAGGCCTTTAAAGAGCAATCG
TTCCTCCCTTTTTACCGTCAGGAGGCAGAACAAATCATTAACAAATTAAGGGCTGGAGAGTCCATAGATAGAGCTCTGTA
TAAACACCCATGCTATGAAAATGACTTTTGTGAAGTGGTGCTGCACGGCCAATTAAGCGGGCAGTTGCATCGTGAACTAT
TCACCTACAGCCAGTTTTTAATGGACCGGCTGGAGCGAAAGGTTGAAAAATGGACGGGAATCCTTCAGCCCGTCATCTAC
GGTATTGTTGCCGGAATGATTTTAATTGTGTATTTGTCGATGCTTTTGCCTATGTATCAGATGATGAATCAATTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Bacillus subtilis subsp. subtilis str. 168 |
69.04 |
93.623 |
0.646 |