Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | AB6911_RS13370 | Genome accession | NZ_CP166481 |
| Coordinates | 2620001..2620336 (+) | Length | 111 a.a. |
| NCBI ID | WP_003325441.1 | Uniprot ID | - |
| Organism | Bacillus atrophaeus strain globigii | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2615001..2625336
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB6911_RS13350 (AB6911_13330) | gcvT | 2615563..2616657 (-) | 1095 | WP_003325445.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| AB6911_RS13355 (AB6911_13335) | - | 2617118..2618788 (+) | 1671 | WP_003325444.1 | DEAD/DEAH box helicase | - |
| AB6911_RS13360 (AB6911_13340) | - | 2618809..2619603 (+) | 795 | WP_003325443.1 | YqhG family protein | - |
| AB6911_RS13365 (AB6911_13345) | sinI | 2619794..2619967 (+) | 174 | WP_003325442.1 | anti-repressor SinI | Regulator |
| AB6911_RS13370 (AB6911_13350) | sinR | 2620001..2620336 (+) | 336 | WP_003325441.1 | transcriptional regulator SinR | Regulator |
| AB6911_RS13375 (AB6911_13355) | tasA | 2620528..2621310 (-) | 783 | WP_003325439.1 | biofilm matrix protein TasA | - |
| AB6911_RS13380 (AB6911_13360) | sipW | 2621374..2621946 (-) | 573 | WP_010789195.1 | signal peptidase I SipW | - |
| AB6911_RS13385 (AB6911_13365) | tapA | 2621930..2622631 (-) | 702 | WP_003325437.1 | amyloid fiber anchoring/assembly protein TapA | - |
| AB6911_RS13390 (AB6911_13370) | - | 2622893..2623216 (+) | 324 | WP_003325436.1 | DUF3889 domain-containing protein | - |
| AB6911_RS13395 (AB6911_13375) | - | 2623263..2623442 (-) | 180 | WP_003325435.1 | YqzE family protein | - |
| AB6911_RS13400 (AB6911_13380) | comGG | 2623512..2623886 (-) | 375 | WP_003325434.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| AB6911_RS13405 (AB6911_13385) | comGF | 2623887..2624282 (-) | 396 | WP_309484978.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| AB6911_RS13410 (AB6911_13390) | comGE | 2624296..2624643 (-) | 348 | WP_003325432.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| AB6911_RS13415 (AB6911_13395) | comGD | 2624627..2625067 (-) | 441 | WP_003325431.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12971.70 Da Isoelectric Point: 9.2569
>NTDB_id=1034671 AB6911_RS13370 WP_003325441.1 2620001..2620336(+) (sinR) [Bacillus atrophaeus strain globigii]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLKKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLKKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=1034671 AB6911_RS13370 WP_003325441.1 2620001..2620336(+) (sinR) [Bacillus atrophaeus strain globigii]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAAACAAACCCCTCCATTCAATTTCTCAAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCTATGACATCCGGGGTTTCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAAACAAACCCCTCCATTCAATTTCTCAAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCTATGACATCCGGGGTTTCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
98.198 |
100 |
0.982 |