Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   QUE75_RS04360 Genome accession   NZ_AP028062
Coordinates   943955..945340 (-) Length   461 a.a.
NCBI ID   WP_286253896.1    Uniprot ID   -
Organism   Marinobacter shengliensis strain D49     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 935538..943853 943955..945340 flank 102


Gene organization within MGE regions


Location: 935538..945340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE75_RS04320 (MAALD49_08490) ispH 935538..936488 (+) 951 WP_286255600.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QUE75_RS04325 (MAALD49_08500) - 936697..937182 (+) 486 WP_286253885.1 GspH/FimT family pseudopilin -
  QUE75_RS04330 (MAALD49_08510) pilV 937229..937642 (+) 414 WP_286253888.1 type IV pilus modification protein PilV -
  QUE75_RS04335 (MAALD49_08520) - 937639..938742 (+) 1104 WP_286253889.1 PilW family protein -
  QUE75_RS04340 - 938787..938861 (+) 75 Protein_853 PilX N-terminal domain-containing pilus assembly protein -
  QUE75_RS04345 (MAALD49_08530) - 938862..939350 (+) 489 WP_286255744.1 hypothetical protein -
  QUE75_RS04350 (MAALD49_08540) - 939362..942838 (+) 3477 WP_286253892.1 pilus assembly protein -
  QUE75_RS04355 (MAALD49_08550) - 942835..943272 (+) 438 WP_286253894.1 type IV pilin protein -
  QUE75_RS20585 (MAALD49_08560) - 943290..943853 (-) 564 WP_396631687.1 GspH/FimT family pseudopilin -
  QUE75_RS04360 (MAALD49_08570) pilR 943955..945340 (-) 1386 WP_286253896.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50828.93 Da        Isoelectric Point: 4.8097

>NTDB_id=103461 QUE75_RS04360 WP_286253896.1 943955..945340(-) (pilR) [Marinobacter shengliensis strain D49]
MTHQTALIVDDEPDIRDLLEITLTRMGITTFTAPDLTTARALLEQHKPQLCLTDMNLPDGNGIDLVHWIQQHAPCTPVAV
ITAYGNMDTAIESLKAGAFDFVSKPVELPRLRELVNSALKLSEPRNHDTAETDEPGLLLGESPQIRKLRNQTRKLARSQA
PVFISGESGSGKELVARMIHMQGPRADGPFVAVNCGAIPSELMESEFFGHKKGSFTGAVENKDGLFRSADGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRPVGDTKEVPVDIRVLSATHKNLPELVQEGSFRQDLFYRINVIELAVPPLRERAEDISLLA
DHILQRIAREYECDPAKLTPEAIERLQGYDFPGNVRELENILERAFTLCDEDLIDAADLHLGGGAIPGTPVSERSSDTGT
SEAPTPVPEGEIDLEGFLENIERQAIEKALEATRWNKTAAAKRLGISFRALRYRLKKLGME

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=103461 QUE75_RS04360 WP_286253896.1 943955..945340(-) (pilR) [Marinobacter shengliensis strain D49]
ATGACACACCAAACAGCGCTGATTGTTGACGACGAGCCGGATATCCGGGACTTGCTGGAAATCACCCTCACCCGCATGGG
GATTACCACCTTCACGGCACCGGACCTGACCACAGCCCGGGCCCTGCTTGAACAACACAAGCCCCAGCTGTGCCTGACCG
ACATGAACCTGCCCGATGGCAATGGCATAGACCTGGTGCACTGGATTCAGCAGCACGCCCCCTGCACGCCGGTGGCCGTG
ATCACCGCTTACGGCAACATGGACACGGCTATCGAATCCCTGAAAGCCGGCGCTTTCGACTTTGTCTCAAAACCCGTGGA
ACTGCCCCGCTTGAGGGAACTGGTGAACAGTGCCCTGAAGCTGAGTGAACCCAGAAACCACGACACTGCCGAAACCGACG
AGCCGGGGCTTCTGCTCGGTGAGTCTCCACAAATCCGCAAGCTGCGAAACCAGACCCGTAAGCTGGCCCGCAGCCAGGCG
CCGGTGTTTATCAGCGGCGAATCCGGCAGTGGTAAAGAGCTGGTTGCCCGAATGATCCACATGCAGGGCCCCCGGGCCGA
TGGCCCCTTTGTTGCTGTTAACTGCGGCGCCATTCCCTCAGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCA
GCTTTACCGGTGCGGTTGAAAACAAGGATGGCCTGTTCCGCAGTGCCGATGGCGGCACCCTGTTCCTGGATGAAGTGGCC
GACCTGCCCCTGGCCATGCAAGTAAAGCTGCTGCGCGCCATACAGGAAAAAGCCGTGCGGCCCGTGGGCGACACCAAGGA
GGTGCCGGTGGATATCCGCGTACTCAGCGCCACTCACAAAAACCTGCCGGAACTGGTGCAGGAAGGCAGCTTCCGCCAGG
ATCTGTTCTACCGCATTAACGTGATTGAACTGGCGGTACCGCCTCTGCGCGAGCGGGCGGAAGACATTTCCCTGCTGGCC
GACCATATTCTGCAGCGCATCGCCCGAGAGTACGAATGCGATCCGGCCAAACTAACGCCAGAGGCTATCGAACGCCTGCA
GGGATACGATTTCCCGGGCAACGTGCGGGAACTGGAAAATATTTTGGAGCGGGCGTTTACGCTGTGTGATGAAGATTTGA
TTGATGCGGCTGATTTGCATCTAGGAGGTGGTGCTATCCCTGGAACCCCGGTATCGGAGCGCAGCTCTGACACCGGCACA
TCGGAGGCTCCTACTCCTGTGCCCGAGGGGGAGATAGACCTGGAGGGCTTCCTGGAGAACATCGAGCGGCAGGCGATTGA
GAAGGCGCTGGAGGCAACCCGGTGGAACAAGACGGCGGCGGCCAAGAGGCTGGGGATCAGTTTTCGGGCGTTGCGGTATC
GGTTGAAGAAATTAGGGATGGAGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(138-304)

Bacterial regulatory protein, Fis family (HTH_8)

(417-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

64.502

100

0.646
  pilR Acinetobacter baumannii strain A118

54.212

100

0.544
  luxO Vibrio cholerae strain A1552

36.947

98.048

0.362

Multiple sequence alignment