Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DXE48_RS00905 Genome accession   NZ_LT992473
Coordinates   182072..182674 (+) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus isolate 14_5418     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 177072..187674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE48_RS00875 mreD 177864..178394 (+) 531 WP_001259929.1 rod shape-determining protein MreD -
  DXE48_RS00880 rplU 178881..179189 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  DXE48_RS00885 - 179195..179515 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  DXE48_RS00890 rpmA 179527..179811 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  DXE48_RS00895 obgE 180298..181590 (+) 1293 WP_000496090.1 GTPase ObgE -
  DXE48_RS00900 - 181603..182058 (+) 456 WP_000368902.1 ACT domain-containing protein -
  DXE48_RS00905 ruvA 182072..182674 (+) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  DXE48_RS00910 ruvB 182706..183709 (+) 1004 Protein_173 Holliday junction branch migration DNA helicase RuvB -
  DXE48_RS00915 queA 183711..184736 (+) 1026 WP_001019177.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  DXE48_RS00920 tgt 184759..185898 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  DXE48_RS00925 yajC 185917..186177 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=1034243 DXE48_RS00905 WP_000271547.1 182072..182674(+) (ruvA) [Staphylococcus aureus isolate 14_5418]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=1034243 DXE48_RS00905 WP_000271547.1 182072..182674(+) (ruvA) [Staphylococcus aureus isolate 14_5418]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAGCGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTTTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425