Detailed information NTG1034119

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB9R83_RS11985
• Genome accession: NZ_CP166302
• Coordinates: 2505074..2505928 (+)
• Length: 284 a.a.
• NCBI ID: WP_019933129.1
• Uniprot ID: -
• Organism: Oceanimonas smirnovii strain OS2020-127
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2500074..2510928

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB9R83_RS11965 (AB9R83_11955)	nadC	2500259..2501113 (+)	855	WP_395544943.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AB9R83_RS11970 (AB9R83_11960)	-	2501242..2501724 (+)	483	WP_395544942.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
AB9R83_RS11975 (AB9R83_11965)	pilB	2501726..2503438 (+)	1713	WP_395544941.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB9R83_RS11980 (AB9R83_11970)	pilC	2503461..2504687 (+)	1227	WP_395535159.1	type II secretion system F family protein	Machinery gene
AB9R83_RS11985 (AB9R83_11975)	pilD	2505074..2505928 (+)	855	WP_019933129.1	prepilin peptidase	Machinery gene
AB9R83_RS11990 (AB9R83_11980)	coaE	2505925..2506536 (+)	612	WP_395544940.1	dephospho-CoA kinase	-
AB9R83_RS11995 (AB9R83_11985)	-	2506526..2507710 (-)	1185	WP_395544939.1	CsgG/HfaB family protein	-
AB9R83_RS12000 (AB9R83_11990)	-	2507721..2509151 (-)	1431	WP_395544938.1	DUF6844 domain-containing protein	-
AB9R83_RS12005 (AB9R83_11995)	lpoB	2509198..2509806 (-)	609	WP_395535155.1	penicillin-binding protein activator LpoB	-

Sequence

Protein

• Length: 284 a.a.
• Molecular weight: 31545.77 Da
• Isoelectric Point: 7.2394

>NTDB_id=1034119 AB9R83_RS11985 WP_019933129.1 2505074..2505928(+) (pilD) [Oceanimonas smirnovii strain OS2020-127]
MTQLLDHTSLLYIVIPLLGLLVGSFLNVVIHRLPLMMQREWQQECAALNEQPVVEQAPFNLCMPRSRCPHCEHPLAARDN
IPLLSWLWLKGRCRYCRAPVAKRYPLVELTSALLAGLVLWRFGPGAQLVAALVFSWVLLCMTLIDLDHLLLPDNLTLPLL
WLGLLLNVGELFVSLPSAVIGAAAGYGILWSLFWLFKLATGKEGMGYGDFKLLAAIGAWFGWQSLLPVLLLASFTGAVLG
LGLMALRRLNEDRVLPFGPALALGGWCYLMWGTEVVDLYWSIAL

Nucleotide

• Length: 855 bp

>NTDB_id=1034119 AB9R83_RS11985 WP_019933129.1 2505074..2505928(+) (pilD) [Oceanimonas smirnovii strain OS2020-127]
ATGACCCAACTGCTCGACCATACTTCTCTGCTTTATATTGTGATCCCCCTGCTCGGCCTGCTGGTGGGCAGCTTTCTTAA
TGTGGTGATTCACCGGCTGCCGCTGATGATGCAGCGAGAGTGGCAGCAGGAATGCGCCGCATTAAATGAACAGCCGGTGG
TGGAGCAGGCTCCCTTTAATCTGTGTATGCCCCGCTCGCGCTGCCCGCACTGCGAACACCCGCTGGCGGCCAGAGATAAT
ATTCCCCTGCTCAGCTGGCTGTGGCTGAAAGGCCGGTGCCGCTATTGCCGCGCGCCTGTAGCCAAACGTTATCCGCTGGT
AGAGCTGACCTCGGCCCTGCTGGCGGGGCTGGTGCTGTGGCGCTTCGGGCCCGGAGCGCAACTGGTGGCGGCGCTGGTGT
TCAGCTGGGTGCTGCTGTGCATGACCCTGATTGATCTCGATCATCTGCTGCTGCCCGATAACCTGACCCTGCCGCTGCTG
TGGCTGGGCCTGCTGCTGAATGTGGGCGAACTGTTTGTATCCCTGCCGTCGGCGGTGATTGGCGCTGCGGCCGGTTACGG
TATTTTATGGAGCCTGTTCTGGCTGTTTAAACTGGCCACCGGCAAGGAAGGCATGGGCTATGGTGACTTCAAACTGCTGG
CTGCCATTGGTGCCTGGTTTGGCTGGCAAAGTCTGCTGCCGGTGCTGTTGCTGGCGTCCTTTACCGGTGCCGTGCTGGGC
CTCGGCCTGATGGCATTGCGTCGCCTGAATGAAGATCGCGTGCTACCCTTTGGTCCGGCGCTGGCACTGGGGGGCTGGTG
TTATCTGATGTGGGGGACGGAAGTGGTGGACCTGTACTGGAGTATTGCGCTGTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (132-241)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-122)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.478	94.366	0.514
pilD	Vibrio campbellii strain DS40M4	48.727	96.831	0.472
pilD	Acinetobacter nosocomialis M2	45.683	97.887	0.447
pilD	Acinetobacter baumannii D1279779	45.324	97.887	0.444
pilD	Neisseria gonorrhoeae MS11	47.619	88.732	0.423