Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   AB6A22_RS16710 Genome accession   NZ_CP166297
Coordinates   3428814..3429977 (-) Length   387 a.a.
NCBI ID   WP_003151385.1    Uniprot ID   -
Organism   Bacillus velezensis strain FCW119-1M2     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3423814..3434977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6A22_RS16680 (AB6A22_16685) - 3424079..3424498 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  AB6A22_RS16685 (AB6A22_16690) comFC 3424572..3425261 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  AB6A22_RS16690 (AB6A22_16695) - 3425267..3425551 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  AB6A22_RS16695 (AB6A22_16700) comFA 3425609..3426994 (-) 1386 WP_024085865.1 DEAD/DEAH box helicase Machinery gene
  AB6A22_RS16700 (AB6A22_16705) - 3427102..3427950 (-) 849 WP_024085866.1 DegV family protein -
  AB6A22_RS16705 (AB6A22_16710) degU 3428048..3428737 (-) 690 WP_407973467.1 two-component system response regulator DegU Regulator
  AB6A22_RS16710 (AB6A22_16715) degS 3428814..3429977 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  AB6A22_RS16715 (AB6A22_16720) - 3430200..3430847 (+) 648 WP_003151384.1 YigZ family protein -
  AB6A22_RS16720 (AB6A22_16725) - 3430852..3432066 (+) 1215 WP_057080262.1 LCP family protein -
  AB6A22_RS16725 (AB6A22_16730) - 3432156..3433232 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  AB6A22_RS16730 (AB6A22_16735) tuaH 3433365..3434561 (-) 1197 WP_239819280.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.82 Da        Isoelectric Point: 7.1378

>NTDB_id=1034086 AB6A22_RS16710 WP_003151385.1 3428814..3429977(-) (degS) [Bacillus velezensis strain FCW119-1M2]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENKRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=1034086 AB6A22_RS16710 WP_003151385.1 3428814..3429977(-) (degS) [Bacillus velezensis strain FCW119-1M2]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTGAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGCTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAGATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTTCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCTACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACAAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAACATTCAGAATCAGAGGAAATAACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTTATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.325

99.483

0.948

Multiple sequence alignment