Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AB6A22_RS16685 Genome accession   NZ_CP166297
Coordinates   3424572..3425261 (-) Length   229 a.a.
NCBI ID   WP_196616643.1    Uniprot ID   -
Organism   Bacillus velezensis strain FCW119-1M2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3419572..3430261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6A22_RS16650 (AB6A22_16655) fliW 3419663..3420094 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  AB6A22_RS16655 (AB6A22_16660) - 3420124..3420693 (-) 570 WP_069013670.1 DUF6470 family protein -
  AB6A22_RS16660 (AB6A22_16665) flgL 3420784..3421701 (-) 918 WP_069013671.1 flagellar hook-associated protein FlgL -
  AB6A22_RS16665 (AB6A22_16670) flgK 3421713..3423230 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  AB6A22_RS16670 (AB6A22_16675) - 3423246..3423728 (-) 483 WP_003151394.1 flagellar protein FlgN -
  AB6A22_RS16675 (AB6A22_16680) flgM 3423743..3424009 (-) 267 WP_057080258.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB6A22_RS16680 (AB6A22_16685) - 3424079..3424498 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  AB6A22_RS16685 (AB6A22_16690) comFC 3424572..3425261 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  AB6A22_RS16690 (AB6A22_16695) - 3425267..3425551 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  AB6A22_RS16695 (AB6A22_16700) comFA 3425609..3426994 (-) 1386 WP_024085865.1 DEAD/DEAH box helicase Machinery gene
  AB6A22_RS16700 (AB6A22_16705) - 3427102..3427950 (-) 849 WP_024085866.1 DegV family protein -
  AB6A22_RS16705 (AB6A22_16710) degU 3428048..3428737 (-) 690 WP_407973467.1 two-component system response regulator DegU Regulator
  AB6A22_RS16710 (AB6A22_16715) degS 3428814..3429977 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25259.95 Da        Isoelectric Point: 8.4880

>NTDB_id=1034083 AB6A22_RS16685 WP_196616643.1 3424572..3425261(-) (comFC) [Bacillus velezensis strain FCW119-1M2]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1034083 AB6A22_RS16685 WP_196616643.1 3424572..3425261(-) (comFC) [Bacillus velezensis strain FCW119-1M2]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGTAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGTTTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603

Multiple sequence alignment