Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AB6A22_RS16705 Genome accession   NZ_CP166297
Coordinates   3428048..3428737 (-) Length   229 a.a.
NCBI ID   WP_407973467.1    Uniprot ID   -
Organism   Bacillus velezensis strain FCW119-1M2     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3423048..3433737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6A22_RS16670 (AB6A22_16675) - 3423246..3423728 (-) 483 WP_003151394.1 flagellar protein FlgN -
  AB6A22_RS16675 (AB6A22_16680) flgM 3423743..3424009 (-) 267 WP_057080258.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB6A22_RS16680 (AB6A22_16685) - 3424079..3424498 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  AB6A22_RS16685 (AB6A22_16690) comFC 3424572..3425261 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  AB6A22_RS16690 (AB6A22_16695) - 3425267..3425551 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  AB6A22_RS16695 (AB6A22_16700) comFA 3425609..3426994 (-) 1386 WP_024085865.1 DEAD/DEAH box helicase Machinery gene
  AB6A22_RS16700 (AB6A22_16705) - 3427102..3427950 (-) 849 WP_024085866.1 DegV family protein -
  AB6A22_RS16705 (AB6A22_16710) degU 3428048..3428737 (-) 690 WP_407973467.1 two-component system response regulator DegU Regulator
  AB6A22_RS16710 (AB6A22_16715) degS 3428814..3429977 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  AB6A22_RS16715 (AB6A22_16720) - 3430200..3430847 (+) 648 WP_003151384.1 YigZ family protein -
  AB6A22_RS16720 (AB6A22_16725) - 3430852..3432066 (+) 1215 WP_057080262.1 LCP family protein -
  AB6A22_RS16725 (AB6A22_16730) - 3432156..3433232 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25894.62 Da        Isoelectric Point: 5.9446

>NTDB_id=1034085 AB6A22_RS16705 WP_407973467.1 3428048..3428737(-) (degU) [Bacillus velezensis strain FCW119-1M2]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVVEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1034085 AB6A22_RS16705 WP_407973467.1 3428048..3428737(-) (degU) [Bacillus velezensis strain FCW119-1M2]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGTAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment