Detailed information NTG1033422

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: AB8808_RS14720
• Genome accession: NZ_CP166101
• Coordinates: 3508019..3509422 (-)
• Length: 467 a.a.
• NCBI ID: WP_369926815.1
• Uniprot ID: -
• Organism: Xanthomonas sp. NCPPB 2632
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3503019..3514422

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB8808_RS14700 (AB8808_14690)	-	3503721..3505517 (+)	1797	WP_369926807.1	ATP-binding protein	-
AB8808_RS14705 (AB8808_14695)	-	3505514..3505966 (+)	453	WP_369926809.1	response regulator	-
AB8808_RS14710 (AB8808_14700)	-	3505988..3507550 (+)	1563	WP_369926811.1	response regulator	-
AB8808_RS14715 (AB8808_14705)	-	3507673..3508068 (+)	396	WP_369926813.1	hypothetical protein	-
AB8808_RS14720 (AB8808_14710)	pilR	3508019..3509422 (-)	1404	WP_369926815.1	sigma-54-dependent transcriptional regulator	Regulator
AB8808_RS14725 (AB8808_14715)	-	3509490..3511133 (-)	1644	WP_369926817.1	PAS domain-containing sensor histidine kinase	-
AB8808_RS14730 (AB8808_14720)	sucC	3511407..3512567 (+)	1161	WP_369926819.1	ADP-forming succinate--CoA ligase subunit beta	-
AB8808_RS14735 (AB8808_14725)	sucD	3512581..3513453 (+)	873	WP_036137555.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 467 a.a.
• Molecular weight: 50466.95 Da
• Isoelectric Point: 5.7779

>NTDB_id=1033422 AB8808_RS14720 WP_369926815.1 3508019..3509422(-) (pilR) [Xanthomonas sp. NCPPB 2632]
MSKQSVLVIDDERDIRELLTITLGRMELDVDAVGSVTEARNALASRRYDLCFTDMRLPDGSGQEIIELIAANHPDMPVAM
ITAYGNVDAAVTALKAGAFDFVSKPVDIHLLRRLVRTALRLSEERRTESGAKGAPGADRLIGDSPVMTEVRGKIVKLARN
QAPVYIGGESGVGKELVARLIHELGPRAAGSFVPVNCGAIPSELMESEFFGHRKGSFTGAHADKEGLFQAAQGGTLFLDE
VAELPLHMQVKLLRAIQEKAVRPIGGRDEIPVDVRILSATHKNLALLVEQGLFRQDLFYRINVIELRVPPLRERRGDVPK
LAEFVLRQLAVESGGGAPGRLQPEALAALEAYQFPGNVRELENILERAMAMCEGDAIEAEDLMLPQRTAAPSPSGADVAS
GSVAPPPASGLSAGGADGSLEDFISNIERDTIIKALEESRYNKTATAKKLGITFRALRYKLKKLGID

Nucleotide

• Length: 1404 bp

>NTDB_id=1033422 AB8808_RS14720 WP_369926815.1 3508019..3509422(-) (pilR) [Xanthomonas sp. NCPPB 2632]
ATGAGCAAGCAGTCCGTACTGGTCATCGACGACGAACGCGATATCCGTGAGTTGCTGACCATCACCCTTGGGCGCATGGA
GCTCGACGTCGACGCCGTGGGGAGCGTCACCGAAGCACGGAACGCCCTGGCGTCCCGTCGCTACGACCTGTGCTTCACCG
ACATGCGCCTGCCCGACGGCAGCGGCCAGGAGATCATCGAGCTGATCGCCGCCAACCATCCGGACATGCCGGTGGCGATG
ATCACCGCCTACGGCAACGTCGATGCGGCGGTGACCGCCCTCAAGGCGGGCGCGTTCGACTTCGTGTCCAAGCCGGTGGA
TATCCACCTCCTGCGCCGCCTCGTCCGCACGGCCCTGCGCCTGTCCGAGGAACGCCGGACCGAGAGCGGCGCCAAGGGCG
CACCCGGTGCCGACCGCCTGATCGGCGATTCGCCGGTCATGACCGAAGTGCGCGGCAAGATCGTCAAACTGGCGCGCAAC
CAGGCGCCGGTGTACATCGGCGGCGAATCGGGCGTGGGCAAGGAACTGGTCGCCCGGCTGATCCATGAGCTGGGCCCGCG
TGCGGCCGGCTCCTTCGTGCCCGTGAACTGCGGCGCCATTCCGTCGGAACTGATGGAAAGCGAGTTCTTCGGCCACCGCA
AGGGCAGCTTCACCGGAGCCCATGCCGACAAGGAGGGCCTGTTCCAGGCAGCGCAGGGCGGCACGCTGTTCCTCGACGAG
GTGGCCGAACTGCCCCTGCACATGCAGGTGAAGCTGCTGCGGGCGATCCAGGAAAAAGCCGTGCGCCCCATCGGCGGCCG
TGACGAGATCCCCGTGGACGTGCGCATCCTTTCGGCCACGCACAAGAACCTGGCCCTGCTGGTCGAACAAGGGTTGTTCC
GCCAGGATCTGTTCTACCGCATCAACGTGATCGAGCTGCGCGTGCCGCCGCTGCGCGAGCGCCGCGGCGACGTACCCAAG
CTGGCCGAGTTCGTCCTGCGCCAGCTTGCCGTGGAATCCGGCGGCGGCGCGCCCGGCCGGCTGCAACCCGAAGCGCTGGC
CGCGCTGGAGGCCTACCAGTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCATGGCCATGTGCGAAG
GCGATGCCATCGAGGCGGAGGACCTGATGCTGCCGCAGCGTACGGCGGCACCCTCGCCTTCCGGTGCGGATGTCGCCTCG
GGCAGCGTGGCTCCCCCGCCGGCCAGCGGACTCTCGGCCGGCGGCGCCGATGGCTCGCTGGAAGATTTCATTTCCAACAT
CGAGCGCGACACCATCATCAAGGCGCTGGAAGAATCGCGGTACAACAAGACCGCCACCGCCAAGAAGCTGGGCATCACGT
TCCGCGCCTTGCGCTACAAGCTGAAGAAGCTCGGGATCGACTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

• Bacterial regulatory protein, Fis family (HTH_8) (424-464)

• Response regulator receiver domain (Response_reg) (6-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.099	100	0.621
pilR	Acinetobacter baumannii strain A118	48.283	99.786	0.482