Detailed information NTG1033353

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: AB8810_RS06160
• Genome accession: NZ_CP166096
• Coordinates: 1427892..1429280 (-)
• Length: 462 a.a.
• NCBI ID: WP_369915849.1
• Uniprot ID: -
• Organism: Xanthomonas sp. NCPPB 3005
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1422892..1434280

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB8810_RS06145 (AB8810_06150)	-	1423755..1424957 (-)	1203	WP_369915846.1	glycosyltransferase	-
AB8810_RS06150 (AB8810_06155)	-	1424981..1425838 (-)	858	WP_369915847.1	glycosyltransferase family 2 protein	-
AB8810_RS06155 (AB8810_06160)	pilB	1425991..1427730 (+)	1740	WP_369915848.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB8810_RS06160 (AB8810_06165)	pilR	1427892..1429280 (-)	1389	WP_369915849.1	sigma-54-dependent transcriptional regulator	Regulator
AB8810_RS06165 (AB8810_06170)	-	1429355..1430968 (-)	1614	WP_191824385.1	PAS domain-containing sensor histidine kinase	-
AB8810_RS06170 (AB8810_06175)	sucC	1431248..1432411 (+)	1164	WP_191824384.1	ADP-forming succinate--CoA ligase subunit beta	-
AB8810_RS06175 (AB8810_06180)	sucD	1432435..1433307 (+)	873	WP_179566644.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 49850.25 Da
• Isoelectric Point: 6.6700

>NTDB_id=1033353 AB8810_RS06160 WP_369915849.1 1427892..1429280(-) (pilR) [Xanthomonas sp. NCPPB 3005]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIHVLRGLVKHALELNNSERAAPSAPPPEQASRLLGASTAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLPMQVKLLRAIQEKSVRPVGASTEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRDRGGDLP
QLAAAILARLAKSHGRVTPLLSPSALDALNRYAFPGNVRELENILERALAMAEDDQISAADLRLPQPGNSARAAAEAAPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1389 bp

>NTDB_id=1033353 AB8810_RS06160 WP_369915849.1 1427892..1429280(-) (pilR) [Xanthomonas sp. NCPPB 3005]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCGAGCAATCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCACGCACGCCGGTGGCG
ATGATCACTGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCCACGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAACTCAACAACAGCGAACGCGCCGCGCCGTCGGCGCCGC
CGCCGGAGCAGGCCAGCCGCCTGCTCGGCGCCTCGACGGCGATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAGTCCGGCGTCGGCAAGGAACTGGTCGCGCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGTCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCCCATGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTGGAC
GAAGTCGCCGAGCTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAGTCGGTGCGCCCGGTCGGCGC
CTCGACCGAAGTGCCGACCGACGTGCGCATCCTGTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGACCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCGCGGCTGGCCAAGAGCCACGGCCGGGTCACCCCGCTGCTGTCGCCGTCGGCGCTGGA
CGCGCTGAACCGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCCTGGCGATGGCCGAAG
ACGACCAGATCAGCGCCGCCGACCTGCGCCTGCCGCAGCCCGGCAACAGCGCCCGCGCCGCGGCCGAAGCCGCCCCCGCG
CTGCCGCCCGGCGTGGTCGACATCGACCCGACCTCCTCCGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAGGAGAACCGCTGGAACAAGACCCGCACCGCGGCCCAGCTCGGCATCACCTTCCGCGCGCTGCGCT
ACAAGCTCAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-114)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Bacterial regulatory protein, Fis family (HTH_8) (419-459)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.745	99.351	0.623
pilR	Acinetobacter baumannii strain A118	46.652	100	0.468