Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   AB8O67_RS20015 Genome accession   NZ_CP166053
Coordinates   3849404..3849523 (+) Length   39 a.a.
NCBI ID   WP_059292327.1    Uniprot ID   A0A9Q4EFJ5
Organism   Bacillus halotolerans strain XYK2-4     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3844404..3854523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8O67_RS19990 (AB8O67_19980) - 3845448..3846149 (+) 702 WP_044159813.1 hypothetical protein -
  AB8O67_RS19995 (AB8O67_19985) - 3846156..3846510 (-) 355 Protein_3881 YncE family protein -
  AB8O67_RS20000 - 3846502..3846627 (-) 126 Protein_3882 hypothetical protein -
  AB8O67_RS20005 (AB8O67_19990) - 3846688..3848046 (-) 1359 WP_369888368.1 YncE family protein -
  AB8O67_RS20010 (AB8O67_19995) rapF 3848275..3849420 (+) 1146 WP_257987131.1 tetratricopeptide repeat protein Regulator
  AB8O67_RS20015 (AB8O67_20000) phrF 3849404..3849523 (+) 120 WP_059292327.1 phosphatase RapF inhibitor PhrF Regulator
  AB8O67_RS20020 (AB8O67_20005) speB 3849633..3850505 (-) 873 WP_044159819.1 agmatinase -
  AB8O67_RS20025 (AB8O67_20010) speE 3850566..3851396 (-) 831 WP_044159821.1 spermidine synthase -
  AB8O67_RS20030 (AB8O67_20015) - 3851597..3853672 (+) 2076 WP_059292319.1 transglycosylase domain-containing protein -
  AB8O67_RS20035 (AB8O67_20020) - 3853705..3854127 (-) 423 WP_326139552.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4230.13 Da        Isoelectric Point: 10.4997

>NTDB_id=1033236 AB8O67_RS20015 WP_059292327.1 3849404..3849523(+) (phrF) [Bacillus halotolerans strain XYK2-4]
MKLKSKLLLSCLALSTVFVATNIANAPTHQMEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1033236 AB8O67_RS20015 WP_059292327.1 3849404..3849523(+) (phrF) [Bacillus halotolerans strain XYK2-4]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCCCTAAGCACTGTGTTTGTCGCAACGAATATTGCAAATGCACC
TACACACCAAATGGAAGTTGCACAGCGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

92.593

69.231

0.641
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment