Detailed information NTG1033235

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: AB8O67_RS20010
• Genome accession: NZ_CP166053
• Coordinates: 3848275..3849420 (+)
• Length: 381 a.a.
• NCBI ID: WP_257987131.1
• Uniprot ID: -
• Organism: Bacillus halotolerans strain XYK2-4
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3843275..3854420

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB8O67_RS19985 (AB8O67_19975)	-	3844174..3845451 (+)	1278	WP_369888367.1	M16 family metallopeptidase	-
AB8O67_RS19990 (AB8O67_19980)	-	3845448..3846149 (+)	702	WP_044159813.1	hypothetical protein	-
AB8O67_RS19995 (AB8O67_19985)	-	3846156..3846510 (-)	355	Protein_3881	YncE family protein	-
AB8O67_RS20000	-	3846502..3846627 (-)	126	Protein_3882	hypothetical protein	-
AB8O67_RS20005 (AB8O67_19990)	-	3846688..3848046 (-)	1359	WP_369888368.1	YncE family protein	-
AB8O67_RS20010 (AB8O67_19995)	rapF	3848275..3849420 (+)	1146	WP_257987131.1	tetratricopeptide repeat protein	Regulator
AB8O67_RS20015 (AB8O67_20000)	phrF	3849404..3849523 (+)	120	WP_059292327.1	phosphatase RapF inhibitor PhrF	Regulator
AB8O67_RS20020 (AB8O67_20005)	speB	3849633..3850505 (-)	873	WP_044159819.1	agmatinase	-
AB8O67_RS20025 (AB8O67_20010)	speE	3850566..3851396 (-)	831	WP_044159821.1	spermidine synthase	-
AB8O67_RS20030 (AB8O67_20015)	-	3851597..3853672 (+)	2076	WP_059292319.1	transglycosylase domain-containing protein	-
AB8O67_RS20035 (AB8O67_20020)	-	3853705..3854127 (-)	423	WP_326139552.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45735.18 Da
• Isoelectric Point: 5.1527

>NTDB_id=1033235 AB8O67_RS20010 WP_257987131.1 3848275..3849420(+) (rapF) [Bacillus halotolerans strain XYK2-4]
MTSVISSSSVGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLENMRIEEQPR
LSDLLLDIDKKQARLTGVLDYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHTAYNIRLLQCHSLFATNFLDLKQYEDAISHFKKAYTMAESEKQPQLMGRTLYNIGLCKNSQEQYES
AITYFKRAISVFEEANILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGIDYSKEAGDIIYLSEFEFLKSLYLSGPDEEAI
QKFFDFLESKMMYADLEDFALDVAKYYHGRENFQKASAYFLKVEQVRQLIQGGVRLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=1033235 AB8O67_RS20010 WP_257987131.1 3848275..3849420(+) (rapF) [Bacillus halotolerans strain XYK2-4]
GTGACAAGTGTCATATCTTCTTCTTCCGTTGGAGAAAAGATTAATGAATGGTATATGTACATACGCCGATTCAGCATACC
GGATGCGGAATATTTACGAAGAGAAATCAAACAAGAGCTGGATCAAATGGAAGAAGACCAGGATCTTCATTTGTATTATT
CACTGATGGAATTCCGGCACAATCTGATGCTTGAGTATCTTGAACCGTTAGAAAACATGCGGATAGAGGAACAGCCGCGA
CTGTCCGATTTGCTGCTTGATATCGATAAAAAACAGGCTCGTTTAACCGGAGTCCTTGACTATTACTTTAATTTCTTCAG
GGGCATGTACGAACTGGACCAACGGGAGTACTTATCTGCTATTAAATTTTTCAAAAAAGCCGAAAGCAAGCTGATTTTCG
TAAAGGATCGAATAGAAAAAGCTGAATTTTTCTTTAAAATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCT
ATGGACTATGCACGGCAGGCATATGAAATATACAAAGAGCACACAGCATATAATATTAGATTGCTTCAATGCCATTCTTT
GTTTGCTACCAATTTCTTAGACCTCAAGCAATATGAGGACGCCATATCACATTTCAAAAAAGCTTATACAATGGCAGAAT
CCGAAAAACAGCCCCAATTAATGGGAAGAACGCTGTATAACATCGGACTTTGCAAAAACAGCCAAGAACAGTATGAGTCA
GCAATCACATATTTCAAAAGAGCCATATCTGTTTTTGAAGAAGCTAACATTCTTCCTTCTCTGCCTCAAGCTTATTTTTT
GATTACACAAATTCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAAGGAATTGATTATTCTAAAG
AGGCTGGAGATATCATTTACTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAGGCAATT
CAGAAATTCTTCGATTTTCTCGAAAGTAAAATGATGTATGCTGATCTTGAAGATTTTGCGCTTGATGTGGCAAAATATTA
TCATGGACGTGAAAATTTCCAAAAAGCTTCCGCGTATTTTCTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGATTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) (132-207)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (223-290)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	92.913	100	0.929
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572