Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AB8O67_RS16955 Genome accession   NZ_CP166053
Coordinates   3232227..3232871 (-) Length   214 a.a.
NCBI ID   WP_024122680.1    Uniprot ID   A0A9Q6AB41
Organism   Bacillus halotolerans strain XYK2-4     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3227227..3237871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8O67_RS16920 (AB8O67_16915) - 3228420..3228851 (+) 432 WP_024122673.1 Na(+)/H(+) antiporter subunit B -
  AB8O67_RS16925 (AB8O67_16920) - 3228851..3229192 (+) 342 WP_044158938.1 Na(+)/H(+) antiporter subunit C -
  AB8O67_RS16930 (AB8O67_16925) - 3229185..3230666 (+) 1482 WP_257987356.1 Na+/H+ antiporter subunit D -
  AB8O67_RS16935 (AB8O67_16930) - 3230672..3231148 (+) 477 WP_044158941.1 Na+/H+ antiporter subunit E -
  AB8O67_RS16940 (AB8O67_16935) - 3231148..3231432 (+) 285 WP_024122677.1 Na(+)/H(+) antiporter subunit F1 -
  AB8O67_RS16945 (AB8O67_16940) mnhG 3231416..3231790 (+) 375 WP_059292644.1 monovalent cation/H(+) antiporter subunit G -
  AB8O67_RS16950 (AB8O67_16945) - 3231829..3232209 (-) 381 WP_193659646.1 hotdog fold thioesterase -
  AB8O67_RS16955 (AB8O67_16950) comA 3232227..3232871 (-) 645 WP_024122680.1 two-component system response regulator ComA Regulator
  AB8O67_RS16960 (AB8O67_16955) comP 3232952..3235261 (-) 2310 WP_326140001.1 two-component system sensor histidine kinase ComP Regulator
  AB8O67_RS16965 (AB8O67_16960) comX 3235277..3235444 (-) 168 WP_326140022.1 competence pheromone ComX Regulator
  AB8O67_RS16970 (AB8O67_16965) comQ 3235428..3236333 (-) 906 WP_326140023.1 polyprenyl synthetase family protein Regulator
  AB8O67_RS16975 (AB8O67_16970) degQ 3236517..3236657 (-) 141 WP_024122683.1 degradation enzyme regulation protein DegQ Regulator
  AB8O67_RS16980 (AB8O67_16975) - 3237118..3237486 (+) 369 WP_044158947.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24109.42 Da        Isoelectric Point: 4.6730

>NTDB_id=1033221 AB8O67_RS16955 WP_024122680.1 3232227..3232871(-) (comA) [Bacillus halotolerans strain XYK2-4]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIHQHDFSSYDLILMDLNLGGDVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGDILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1033221 AB8O67_RS16955 WP_024122680.1 3232227..3232871(-) (comA) [Bacillus halotolerans strain XYK2-4]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCCAGCGAACAGTTCATACACCAGCATGATTTCTCATCATATGATCTCATCTTAA
TGGATTTGAACTTAGGCGGCGATGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTATATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGCGCCATCAGCAAAAC
CGAATCAAAGGAAAAGATCACCCAATACATATATCACGTGCTCAACGGAGACATTTTAGTCGATTTCGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCCCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCAAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGTTTTACCAACCAAGAAATTGCAGATGCGCTTCATTTAAGCAAGCGGTCCATCGAATA
CAGCCTGACGTCGATTTTCAACAAGCTTAATGTCGGTTCCAGGACGGAAGCGGTGTTGATTGCAAAATCAGACGGTGTGC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

98.598

100

0.986

Multiple sequence alignment