Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DXE58_RS12530 Genome accession   NZ_LT992456
Coordinates   2418268..2418870 (+) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus isolate 1_1439     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2413268..2423870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE58_RS12500 mreD 2414060..2414590 (+) 531 WP_001259929.1 rod shape-determining protein MreD -
  DXE58_RS12505 rplU 2415077..2415385 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  DXE58_RS12510 - 2415391..2415711 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  DXE58_RS12515 rpmA 2415723..2416007 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  DXE58_RS12520 obgE 2416494..2417786 (+) 1293 WP_000496090.1 GTPase ObgE -
  DXE58_RS12525 - 2417799..2418254 (+) 456 WP_000368902.1 ACT domain-containing protein -
  DXE58_RS12530 ruvA 2418268..2418870 (+) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  DXE58_RS12535 ruvB 2418902..2419905 (+) 1004 Protein_2328 Holliday junction branch migration DNA helicase RuvB -
  DXE58_RS12540 queA 2419907..2420932 (+) 1026 WP_001019177.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  DXE58_RS12545 tgt 2420955..2422094 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  DXE58_RS12550 yajC 2422113..2422373 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=1032986 DXE58_RS12530 WP_000271547.1 2418268..2418870(+) (ruvA) [Staphylococcus aureus isolate 1_1439]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=1032986 DXE58_RS12530 WP_000271547.1 2418268..2418870(+) (ruvA) [Staphylococcus aureus isolate 1_1439]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAGCGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTTTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425