Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   DYY98_RS03855 Genome accession   NZ_LT992436
Coordinates   780300..781289 (-) Length   329 a.a.
NCBI ID   WP_000219063.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 1549-REV     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 775300..786289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY98_RS03840 acsA 776500..778206 (-) 1707 WP_000862076.1 acetate--CoA ligase -
  DYY98_RS03845 - 778375..779007 (+) 633 WP_001015990.1 hypothetical protein -
  DYY98_RS03850 - 779032..780201 (+) 1170 WP_001184009.1 acetoin utilization protein AcuC -
  DYY98_RS03855 ccpA 780300..781289 (-) 990 WP_000219063.1 catabolite control protein A Regulator
  DYY98_RS03860 - 781362..781474 (-) 113 Protein_741 hypothetical protein -
  DYY98_RS03865 - 781809..782900 (-) 1092 WP_000066379.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  DYY98_RS03870 - 783371..783472 (-) 102 Protein_743 hypothetical protein -
  DYY98_RS03875 - 783607..784971 (-) 1365 WP_000193949.1 hypothetical protein -
  DYY98_RS03880 - 785045..785536 (-) 492 WP_000383815.1 DUF948 domain-containing protein -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 35987.19 Da        Isoelectric Point: 5.5023

>NTDB_id=1032870 DYY98_RS03855 WP_000219063.1 780300..781289(-) (ccpA) [Staphylococcus aureus isolate 1549-REV]
MTVTIYDVAREARVSMATVSRVVNGNQNVKAETKNKVNEVIKRLNYRPNAVARGLASKKTTTVGVIIPDISNIYYSQLAR
GLEDIATMYKYHSIISNSDNDPEKEKEIFNNLLSKQVDGIIFLGGTITEEMKELINQSSVPVVVSGTNGKDAHIASVNID
FTEAAKEITGELIEKGAKSFALVGGEHSKKAQEDVLAGLTEVLDKNGLQLGDALNCTGAESYKEGVKAFAKMKGNLPDAI
LCISDEEAIGIMHSAMDAGIKVPEELQIISFNNTRLVEMVRPQLSSVIQPLYDIGAVGMRLLTKYMNDEKIEEPNVVLPH
RIEYRGTTK

Nucleotide


Download         Length: 990 bp        

>NTDB_id=1032870 DYY98_RS03855 WP_000219063.1 780300..781289(-) (ccpA) [Staphylococcus aureus isolate 1549-REV]
ATGACAGTTACTATATATGATGTAGCAAGGGAAGCACGTGTTTCAATGGCCACTGTATCACGTGTTGTTAATGGGAACCA
GAATGTTAAAGCAGAGACAAAAAATAAAGTTAACGAAGTTATCAAGCGATTGAATTACCGTCCAAATGCTGTTGCCAGAG
GTCTAGCAAGCAAAAAGACGACAACAGTAGGTGTGATTATCCCTGATATTTCAAATATCTATTACTCACAACTAGCAAGA
GGGCTTGAAGATATTGCAACAATGTACAAATATCATTCAATTATTTCTAACTCAGATAACGATCCTGAAAAGGAAAAAGA
AATTTTTAATAACTTATTAAGTAAACAGGTTGATGGTATTATTTTCCTTGGTGGTACAATTACTGAAGAAATGAAAGAAT
TGATAAATCAATCATCTGTACCTGTAGTTGTATCAGGAACTAATGGTAAGGATGCACATATAGCATCTGTTAATATTGAT
TTTACTGAAGCTGCGAAAGAAATTACGGGAGAGTTAATTGAAAAAGGCGCTAAATCATTTGCATTAGTAGGTGGAGAACA
TTCTAAAAAAGCTCAAGAAGACGTTTTAGCAGGTTTAACTGAAGTGTTAGATAAAAATGGTCTTCAATTAGGCGATGCAT
TAAATTGTACAGGTGCTGAAAGTTATAAAGAAGGCGTAAAAGCTTTTGCTAAAATGAAAGGTAATCTTCCAGATGCTATA
TTATGTATCAGTGACGAAGAAGCTATTGGTATCATGCATAGTGCAATGGATGCTGGTATTAAAGTTCCAGAGGAATTACA
AATTATTAGTTTCAATAATACACGCTTAGTTGAGATGGTTAGACCACAACTTTCTAGTGTTATTCAACCATTATATGATA
TCGGTGCAGTAGGAATGCGCTTACTTACTAAATATATGAACGATGAAAAGATAGAAGAACCGAATGTAGTTTTACCACAC
AGAATTGAATATCGTGGCACAACAAAATAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(171-328)

Bacterial regulatory proteins, lacI family (LacI)

(4-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

47.879

100

0.48
  ccpA Streptococcus gordonii str. Challis substr. CH1

47.112

100

0.471
  ccpA Streptococcus pneumoniae D39

46.201

100

0.462