Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AB8E30_RS07350 Genome accession   NZ_CP165965
Coordinates   1393529..1395268 (+) Length   579 a.a.
NCBI ID   WP_369903482.1    Uniprot ID   -
Organism   Bacillus manliponensis strain jeju3-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1388529..1400268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8E30_RS07330 (AB8E30_07335) - 1388731..1389621 (+) 891 WP_369903481.1 polyprenyl synthetase family protein -
  AB8E30_RS07335 (AB8E30_07340) dxs 1389888..1391780 (+) 1893 WP_369902673.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AB8E30_RS07340 (AB8E30_07345) - 1391784..1392617 (+) 834 WP_369902674.1 TlyA family RNA methyltransferase -
  AB8E30_RS07345 (AB8E30_07350) argR 1392806..1393255 (+) 450 WP_369902675.1 arginine repressor ArgR -
  AB8E30_RS07350 (AB8E30_07355) recN 1393529..1395268 (+) 1740 WP_369903482.1 DNA repair protein RecN Machinery gene
  AB8E30_RS07355 (AB8E30_07360) spoIVB 1395452..1396753 (+) 1302 WP_369902676.1 SpoIVB peptidase -
  AB8E30_RS07360 (AB8E30_07365) spo0A 1397060..1397854 (+) 795 WP_369902677.1 sporulation transcription factor Spo0A Regulator
  AB8E30_RS07365 (AB8E30_07370) - 1398163..1398543 (-) 381 WP_369902678.1 DUF1433 domain-containing protein -
  AB8E30_RS07370 (AB8E30_07375) - 1398601..1399785 (+) 1185 Protein_1397 hypothetical protein -
  AB8E30_RS07375 (AB8E30_07380) - 1399787..1400170 (+) 384 WP_369902680.1 hypothetical protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 66161.16 Da        Isoelectric Point: 4.6736

>NTDB_id=1032636 AB8E30_RS07350 WP_369903482.1 1393529..1395268(+) (recN) [Bacillus manliponensis strain jeju3-1]
MLSELSIRNFAIIESLNITFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTDKAEIEGLFYVEDEYHPCIAK
AEELDIEIEDGMIILKRDISASGKSVCRVNGKLVTLSTLKEIGKTIVDIHGQHETQDLMNEERHLFMLDHFEGDRITTQL
EVYKHVYSEYEQLKKQLRALTENEQQMAHRLDLIQFQLEEIRKADLRIDEEQELTEERLKISNFEKIYKALGDAYRSLRD
DRGGLDQVRNAMSQMESISDLDTSYQENYDTIANSYYLLEEVSYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILEYADKIEEEVFTIENKDVHVETTKKKMKELEQVIVKEATVLSELRRDLAERLTDAIHQELKELYMEKTKFEVMMM
RKEGTAEDPIVDGHAVKLGQDGYDIVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADAHLFIRKQIVNDRTVTSVTVLNEEEKTTEIARMISGVEITDLTTEH
ARELITQAHRFKQSAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=1032636 AB8E30_RS07350 WP_369903482.1 1393529..1395268(+) (recN) [Bacillus manliponensis strain jeju3-1]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAATCATTAAATATTACTTTTCAAAAAGGGTTAACAGTTTT
AAGTGGTGAAACAGGGGCTGGTAAATCCATTATTATTGATGCGATTAGTCTTCTTGTTGGTGGCCGTGGTTCTGCTGAAT
TTGTTCGTTATGGAACAGATAAAGCAGAAATAGAAGGATTGTTCTATGTAGAAGATGAGTATCATCCTTGTATCGCAAAA
GCTGAAGAACTAGATATTGAAATTGAAGACGGCATGATCATTTTGAAACGAGACATTTCAGCAAGTGGAAAGAGTGTATG
CCGTGTTAATGGAAAACTTGTTACGTTAAGTACATTAAAAGAAATCGGGAAAACGATTGTTGACATTCATGGTCAACATG
AAACACAAGATTTAATGAATGAAGAACGTCATTTGTTTATGTTAGATCATTTTGAAGGAGATCGCATTACGACGCAGCTA
GAAGTATATAAGCATGTATATAGCGAATATGAGCAATTAAAGAAACAATTGCGCGCTTTAACGGAAAATGAGCAACAAAT
GGCGCACCGTTTAGATTTAATTCAATTTCAGTTAGAAGAAATTCGTAAAGCGGATTTGAGAATTGATGAAGAACAAGAAT
TAACAGAAGAACGTTTGAAAATCTCAAATTTTGAGAAGATTTATAAGGCGCTAGGCGATGCGTATCGCTCTTTAAGGGAC
GATAGAGGTGGCCTTGATCAAGTACGTAATGCGATGAGTCAAATGGAGAGTATCTCTGATTTAGATACGTCGTATCAAGA
GAACTATGACACGATAGCAAATAGTTATTACTTGTTAGAGGAAGTGTCATATCAACTTCGCGAAAAGTTGGATATGATGG
AGTATGATCCAAATCGTCTAGATGAAATTGAGACACGTTTAAATGAAATTCGTATGTTAAAGCGTAAATATGGAAATACT
GTAGAAGAAATTTTAGAGTATGCAGATAAAATTGAAGAAGAAGTATTTACGATTGAAAATAAAGATGTACACGTGGAAAC
AACAAAGAAAAAAATGAAAGAGTTAGAGCAAGTTATAGTAAAAGAAGCAACAGTGTTAAGTGAGTTGCGACGTGATTTAG
CTGAAAGGTTAACGGACGCAATTCATCAAGAGCTAAAAGAGTTGTACATGGAAAAAACAAAATTTGAAGTGATGATGATG
AGAAAAGAAGGAACTGCTGAAGATCCTATTGTAGACGGACATGCTGTAAAACTTGGACAAGATGGATACGATATAGTTGA
ATTTTATATTTCTACAAACCCAGGTGAACCATTAAAACCATTATCAAAAGTCGCTTCTGGTGGGGAATTATCGCGTATTA
TTTTAGCGCTAAAGAGTATCTTTTCAAAACATCAAGGTGTCGCTTCTGTTATTTTTGATGAAGTGGATACAGGAGTAAGT
GGTCGCGTTGCACAGGCAATTGCGGAAAAGATTTATCGTGTGTCAGTTAATTCACAAGTATTATGTATTACTCATTTACC
ACAGGTTGCCTCGATGGCAGATGCTCATTTGTTTATTCGAAAACAAATTGTGAATGATCGAACTGTTACATCTGTTACCG
TTCTAAATGAAGAGGAAAAAACGACAGAAATCGCTCGTATGATTTCGGGGGTTGAAATTACAGATTTAACGACAGAACAT
GCGCGCGAATTAATTACGCAAGCACATCGTTTTAAACAGTCAGCAGAAGCTATCCAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

58.232

99.655

0.58

Multiple sequence alignment