Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AB8E26_RS12575 Genome accession   NZ_CP165963
Coordinates   2783812..2785197 (-) Length   461 a.a.
NCBI ID   WP_159497679.1    Uniprot ID   A0A6P1EJL1
Organism   Stenotrophomonas rhizophila strain busan1-1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2778812..2790197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8E26_RS12555 (AB8E26_12565) pilA2 2779293..2779727 (+) 435 WP_369970414.1 pilin Machinery gene
  AB8E26_RS12560 (AB8E26_12570) - 2779798..2781009 (+) 1212 WP_369968048.1 isoprenylcysteine carboxylmethyltransferase family protein -
  AB8E26_RS12565 (AB8E26_12575) - 2780996..2781922 (+) 927 WP_369968049.1 serine hydrolase -
  AB8E26_RS12570 (AB8E26_12580) pilB 2781983..2783710 (+) 1728 WP_369968050.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AB8E26_RS12575 (AB8E26_12585) pilR 2783812..2785197 (-) 1386 WP_159497679.1 sigma-54 dependent transcriptional regulator Regulator
  AB8E26_RS12580 (AB8E26_12590) - 2785286..2786899 (-) 1614 WP_369968051.1 PAS domain-containing sensor histidine kinase -
  AB8E26_RS12585 (AB8E26_12595) sucC 2787251..2788420 (+) 1170 WP_159497677.1 ADP-forming succinate--CoA ligase subunit beta -
  AB8E26_RS12590 (AB8E26_12600) sucD 2788442..2789317 (+) 876 WP_128097080.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50160.54 Da        Isoelectric Point: 6.8313

>NTDB_id=1032579 AB8E26_RS12575 WP_159497679.1 2783812..2785197(-) (pilR) [Stenotrophomonas rhizophila strain busan1-1]
MNDTRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVTEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNSERAVPAAPPSEQAARLLGDSPAMNGLRTTITKVAR
SQAPVYILGESGVGKELVARTIHAQSARSAGTFVPVNCGAIPSELMESEFFGHKKGSFSGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSIRPVGAATEVPVDVRILSATHKDLGELVEDGRFRHDLYYRINVIELRVPPLRERRSDLP
QLAASILARLARTHERPTPLLAPSAIDALAQYHFPGNVRELENILERALALAESDSIGASDLRLPQHATPRHGAGPAPMH
EEAVVDLPAGNGALPSYIEQMERTAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGMD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1032579 AB8E26_RS12575 WP_159497679.1 2783812..2785197(-) (pilR) [Stenotrophomonas rhizophila strain busan1-1]
ATGAACGACACCCGCAGCGCCCTCGTCGTCGACGACGAACGTGACATCCGCGAACTGCTGGTACTGACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAGTTGCTCGCCAGCAACCCGTACGATCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAGCTGGTCACCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAGGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGCGGGCTGGTCAAGCACGCGCTGGAGCTCAACAACAGCGAGCGCGCCGTACCTGCCGCGCCGC
CGTCGGAACAGGCTGCCCGCCTGCTGGGGGATTCGCCGGCGATGAACGGGCTGCGCACCACCATCACCAAGGTCGCGCGC
AGCCAGGCCCCGGTTTACATCCTGGGCGAATCGGGGGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGCGCAGAGCGC
TCGTTCGGCCGGCACCTTCGTCCCGGTCAACTGCGGCGCGATTCCGTCGGAGCTGATGGAAAGCGAGTTCTTCGGGCACA
AGAAAGGCAGCTTCAGCGGTGCCCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCCCATGGCGGCACCCTGTTCCTGGAC
GAAGTGGCCGAACTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGATCCGCCCGGTCGGTGC
CGCCACTGAAGTACCGGTGGACGTGCGCATCCTGTCGGCCACGCACAAGGACCTGGGCGAACTGGTCGAGGACGGCCGCT
TCCGCCACGACCTGTATTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCCGCAGCGACCTGCCG
CAACTGGCGGCGTCGATCCTGGCGCGGCTGGCCCGCACCCACGAGCGCCCCACCCCGCTGCTGGCACCGTCGGCCATCGA
CGCGCTGGCGCAGTACCACTTCCCGGGCAACGTGCGCGAGCTGGAGAACATCCTGGAACGCGCCCTGGCCCTGGCCGAAT
CGGACAGCATCGGCGCCAGTGACCTGCGCCTGCCGCAGCACGCCACGCCGCGCCATGGCGCCGGCCCGGCACCGATGCAC
GAAGAAGCCGTGGTCGACCTGCCCGCCGGCAACGGTGCCCTGCCCTCCTACATCGAGCAGATGGAGCGCACCGCCATCCA
GAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCCGCACCGCCGCGCAACTGGGCATCACCTTCCGCGCGTTGCGGTACA
AGCTGAAGAAGCTGGGCATGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1EJL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.363

99.132

0.618
  pilR Acinetobacter baumannii strain A118

48.927

100

0.495

Multiple sequence alignment