Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QUE23_RS01655 Genome accession   NZ_AP028022
Coordinates   309986..310801 (+) Length   271 a.a.
NCBI ID   WP_286348961.1    Uniprot ID   -
Organism   Helicobacter sp. NHP21005 strain NHP21-005     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 304986..315801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE23_RS01635 (NHP21005_03390) - 305252..307865 (-) 2614 Protein_320 phosphoenolpyruvate carboxylase -
  QUE23_RS01640 (NHP21005_03410) ilvC 307939..308931 (+) 993 WP_286348958.1 ketol-acid reductoisomerase -
  QUE23_RS01645 (NHP21005_03420) minD 308940..309740 (+) 801 WP_286348959.1 septum site-determining protein MinD -
  QUE23_RS01650 (NHP21005_03430) minE 309737..309985 (+) 249 WP_286348960.1 cell division topological specificity factor MinE -
  QUE23_RS01655 (NHP21005_03440) dprA 309986..310801 (+) 816 WP_286348961.1 DNA-processing protein DprA Machinery gene
  QUE23_RS01660 (NHP21005_03450) dprB 310798..311190 (+) 393 WP_286348962.1 Holliday junction resolvase RuvX Machinery gene
  QUE23_RS01665 (NHP21005_03460) - 311172..311894 (-) 723 WP_286348963.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QUE23_RS01670 (NHP21005_03470) hemB 311894..312862 (-) 969 WP_286348964.1 porphobilinogen synthase -
  QUE23_RS01675 (NHP21005_03480) - 312855..314054 (-) 1200 WP_286348965.1 phosphoribosyltransferase family protein -
  QUE23_RS01680 (NHP21005_03490) - 314054..315289 (-) 1236 WP_286348966.1 ArsS family sensor histidine kinase -

Sequence

Protein


Download         Length: 271 a.a.        Molecular weight: 29419.58 Da        Isoelectric Point: 9.4835

>NTDB_id=103229 QUE23_RS01655 WP_286348961.1 309986..310801(+) (dprA) [Helicobacter sp. NHP21005 strain NHP21-005]
MLSPFTPSPLDFLPLSFKALKKPPKLLHYVGDLKHLQAPLKVAIVGTRKPTTYTQQITATLAKELAKIGAVVVSGGALGV
DIIAQKNALPLTIMFAPCSLKRIYPPSNAEVIQQIAKVGLILSEYAEDFQPYRSTFLERNRLVIALSDLVIIPEAQETSG
SMASARLALELKKPLFVLPQRLFESPGTNALLAQNKATAIYDIAAFVGDLARKFGLSAPTTPPTAPVPNDFLAFCQKSPS
FEEAYAVFGDLLLEQELLGVVKREHGRVVLL

Nucleotide


Download         Length: 816 bp        

>NTDB_id=103229 QUE23_RS01655 WP_286348961.1 309986..310801(+) (dprA) [Helicobacter sp. NHP21005 strain NHP21-005]
ATGTTAAGCCCTTTCACACCAAGCCCTCTAGACTTTCTACCCTTAAGCTTTAAAGCCCTGAAAAAGCCCCCCAAACTCTT
ACACTATGTGGGCGATCTCAAGCACCTGCAAGCCCCTTTGAAAGTCGCCATTGTCGGCACAAGAAAGCCCACCACCTACA
CCCAGCAAATCACCGCCACACTCGCCAAAGAGCTAGCTAAAATCGGGGCGGTGGTGGTGAGTGGGGGGGCATTGGGCGTA
GACATCATCGCCCAAAAAAACGCCCTACCCCTAACCATCATGTTTGCCCCCTGCTCTTTAAAACGCATTTATCCGCCCAG
CAACGCTGAAGTTATCCAGCAAATTGCTAAAGTGGGGCTGATTTTGAGCGAATATGCTGAAGATTTTCAGCCCTACCGCT
CCACATTCTTAGAGAGAAACCGCCTAGTCATTGCCTTGAGCGATCTTGTCATTATCCCAGAGGCACAGGAAACCAGCGGT
TCAATGGCAAGTGCAAGGCTCGCACTGGAGTTAAAAAAGCCCCTATTTGTCCTGCCCCAAAGGCTGTTTGAGAGTCCGGG
TACCAACGCTCTACTCGCCCAAAATAAAGCCACAGCGATTTACGACATTGCCGCCTTTGTGGGGGATTTGGCGCGCAAGT
TTGGCTTAAGTGCCCCCACCACGCCCCCCACAGCCCCAGTCCCAAACGACTTTTTGGCGTTTTGCCAAAAGTCCCCGAGT
TTTGAAGAGGCTTACGCGGTGTTTGGGGATTTGCTGCTCGAGCAAGAGCTCTTAGGCGTGGTGAAAAGAGAGCATGGACG
GGTGGTGTTGCTGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(14-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

58.889

99.631

0.587
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

46.875

94.465

0.443

Multiple sequence alignment