Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   QUE23_RS01660 Genome accession   NZ_AP028022
Coordinates   310798..311190 (+) Length   130 a.a.
NCBI ID   WP_286348962.1    Uniprot ID   -
Organism   Helicobacter sp. NHP21005 strain NHP21-005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 305798..316190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE23_RS01640 (NHP21005_03410) ilvC 307939..308931 (+) 993 WP_286348958.1 ketol-acid reductoisomerase -
  QUE23_RS01645 (NHP21005_03420) minD 308940..309740 (+) 801 WP_286348959.1 septum site-determining protein MinD -
  QUE23_RS01650 (NHP21005_03430) minE 309737..309985 (+) 249 WP_286348960.1 cell division topological specificity factor MinE -
  QUE23_RS01655 (NHP21005_03440) dprA 309986..310801 (+) 816 WP_286348961.1 DNA-processing protein DprA Machinery gene
  QUE23_RS01660 (NHP21005_03450) dprB 310798..311190 (+) 393 WP_286348962.1 Holliday junction resolvase RuvX Machinery gene
  QUE23_RS01665 (NHP21005_03460) - 311172..311894 (-) 723 WP_286348963.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QUE23_RS01670 (NHP21005_03470) hemB 311894..312862 (-) 969 WP_286348964.1 porphobilinogen synthase -
  QUE23_RS01675 (NHP21005_03480) - 312855..314054 (-) 1200 WP_286348965.1 phosphoribosyltransferase family protein -
  QUE23_RS01680 (NHP21005_03490) - 314054..315289 (-) 1236 WP_286348966.1 ArsS family sensor histidine kinase -
  QUE23_RS01685 (NHP21005_03500) - 315330..316013 (-) 684 WP_286348967.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14645.26 Da        Isoelectric Point: 8.5095

>NTDB_id=103230 QUE23_RS01660 WP_286348962.1 310798..311190(+) (dprB) [Helicobacter sp. NHP21005 strain NHP21-005]
MIVACDIGLKRIGLAMCVQDIILPLEPILRINRKQASQELQALLESKNPSTLVVGLPPENYADTRKRILHFVGLLNFAPL
VFVNECNTSLDALENTHHLKVQKRQNARKDGKLDSLAACEILKRYQEMLV

Nucleotide


Download         Length: 393 bp        

>NTDB_id=103230 QUE23_RS01660 WP_286348962.1 310798..311190(+) (dprB) [Helicobacter sp. NHP21005 strain NHP21-005]
GTGATTGTGGCGTGCGACATTGGATTAAAACGCATTGGTTTAGCCATGTGCGTGCAAGACATTATTTTACCCCTAGAGCC
GATTTTGCGTATCAATCGCAAACAAGCCAGCCAAGAGTTGCAAGCCCTGCTAGAGAGTAAAAATCCTAGCACCCTTGTAG
TGGGCTTGCCCCCCGAAAACTACGCTGACACCCGCAAACGCATTTTGCACTTTGTGGGGCTATTAAACTTTGCGCCCCTT
GTGTTTGTCAATGAGTGCAACACAAGCCTAGATGCCCTAGAAAACACCCACCACCTAAAAGTGCAAAAACGCCAAAACGC
CCGCAAAGACGGCAAGCTAGACAGCCTGGCCGCCTGTGAAATTTTAAAACGCTATCAAGAGATGTTGGTGTAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

55.556

96.923

0.538

Multiple sequence alignment