Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   LSAF01_RS04910 Genome accession   NZ_LT960777
Coordinates   977727..978386 (-) Length   219 a.a.
NCBI ID   WP_011374681.1    Uniprot ID   Q38X00
Organism   Latilactobacillus sakei strain FLEC01     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 972727..983386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSAF01_RS04895 (LSAF01_0981) parE 974146..976137 (-) 1992 WP_011374678.1 DNA topoisomerase IV subunit B -
  LSAF01_RS04900 (LSAF01_0982) plsY 976339..976959 (+) 621 WP_011374679.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  LSAF01_RS04905 (LSAF01_0983) - 976982..977743 (-) 762 WP_011374680.1 ABC transporter permease -
  LSAF01_RS04910 (LSAF01_0984) comA 977727..978386 (-) 660 WP_011374681.1 ATP-binding cassette domain-containing protein Regulator
  LSAF01_RS04915 (LSAF01_0985) thiD 978555..979352 (+) 798 WP_011374682.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LSAF01_RS04920 (LSAF01_0986) budA 979528..980247 (-) 720 WP_056947618.1 acetolactate decarboxylase -
  LSAF01_RS04925 (LSAF01_0987) alsS 980281..981963 (-) 1683 WP_056947616.1 acetolactate synthase AlsS -
  LSAF01_RS04930 (LSAF01_0988) - 982088..982966 (-) 879 WP_056947614.1 aldose 1-epimerase family protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24149.60 Da        Isoelectric Point: 5.0641

>NTDB_id=1032280 LSAF01_RS04910 WP_011374681.1 977727..978386(-) (comA) [Latilactobacillus sakei strain FLEC01]
MLQLETKGLNYSVDGQAILSDINITIEQGSYNTIVGPSGSGKSTLLRLLADLLTPTSGEILLAGQAISDYKPTQYRQRVS
YCFQQPTLFGTTVGDNLVFPFEIRELPVDETLVQTQLARVGLAEMPLTKKITTLSGGEKQRIALIRNLMFKPEILLLDEI
TTGLDEQTKSLVNGLITHLNQEDGITVLSITHDTQEQQRKGRQLQIVAGRLVHADESSR

Nucleotide


Download         Length: 660 bp        

>NTDB_id=1032280 LSAF01_RS04910 WP_011374681.1 977727..978386(-) (comA) [Latilactobacillus sakei strain FLEC01]
ATGCTTCAGCTAGAGACAAAGGGCCTTAATTATAGCGTTGATGGCCAAGCAATATTGAGCGATATTAATATCACAATTGA
ACAAGGGTCTTATAATACGATTGTGGGACCATCAGGGAGTGGTAAGAGTACGTTGTTACGGCTATTAGCCGATTTATTGA
CACCAACGAGTGGGGAGATTTTGTTGGCAGGACAGGCCATTAGCGACTATAAACCGACGCAATATCGGCAACGCGTGTCT
TATTGCTTCCAACAACCAACGTTATTTGGGACGACAGTTGGTGATAATCTAGTATTTCCGTTTGAAATTCGCGAATTACC
AGTGGATGAGACGCTAGTTCAGACGCAATTAGCCCGAGTTGGGTTAGCGGAGATGCCCTTGACTAAAAAGATTACAACGC
TTTCGGGGGGCGAGAAGCAACGAATTGCTTTAATTCGTAACCTGATGTTTAAACCGGAAATCCTGCTACTGGATGAAATT
ACGACCGGCCTAGATGAGCAGACTAAATCCTTGGTTAATGGGCTAATCACACATTTGAATCAAGAAGATGGGATTACGGT
CTTGTCGATTACCCATGATACACAAGAACAACAACGGAAAGGGCGTCAGCTTCAAATTGTAGCTGGTCGTTTGGTACATG
CAGATGAATCTAGCCGTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38X00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

36.364

100

0.365
  comA Streptococcus pneumoniae Rx1

35.909

100

0.361
  comA Streptococcus pneumoniae D39

35.909

100

0.361
  comA Streptococcus pneumoniae R6

35.909

100

0.361
  comA Streptococcus mitis NCTC 12261

35.909

100

0.361