Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   CKV94_RS08765 Genome accession   NZ_LT906482
Coordinates   1739993..1740574 (-) Length   193 a.a.
NCBI ID   WP_003821991.1    Uniprot ID   -
Organism   Eikenella corrodens strain NCTC10596     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1734993..1745574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV94_RS08740 (SAMEA4412678_01718) - 1736240..1736899 (+) 660 WP_035579750.1 hypothetical protein -
  CKV94_RS08745 (SAMEA4412678_01719) - 1737101..1738009 (-) 909 WP_003821995.1 AraC family transcriptional regulator -
  CKV94_RS08750 (SAMEA4412678_01720) - 1738266..1738607 (+) 342 WP_003821994.1 carboxymuconolactone decarboxylase family protein -
  CKV94_RS08755 (SAMEA4412678_01721) - 1738684..1739070 (+) 387 WP_035573289.1 rhodanese-like domain-containing protein -
  CKV94_RS08760 (SAMEA4412678_01722) nadD 1739182..1739796 (-) 615 WP_003821992.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  CKV94_RS08765 (SAMEA4412678_01723) ruvA 1739993..1740574 (-) 582 WP_003821991.1 Holliday junction branch migration protein RuvA Machinery gene
  CKV94_RS08770 (SAMEA4412678_01724) - 1740672..1741151 (+) 480 WP_003821990.1 hypothetical protein -
  CKV94_RS08775 (SAMEA4412678_01725) - 1741218..1742759 (+) 1542 WP_003821989.1 type I restriction-modification system subunit M -
  CKV94_RS08780 (SAMEA4412678_01726) - 1742756..1743766 (+) 1011 WP_003821988.1 virulence RhuM family protein -
  CKV94_RS08785 (SAMEA4412678_01727) - 1743932..1745197 (+) 1266 WP_003821985.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20483.59 Da        Isoelectric Point: 5.8176

>NTDB_id=1032058 CKV94_RS08765 WP_003821991.1 1739993..1740574(-) (ruvA) [Eikenella corrodens strain NCTC10596]
MISKLTGKLIEAIPPQVVIDVNGVAYEADVSMQTFYTLPPVGETVSLYTQLIVREDAHLLFGFGSHSERNTFRQLIKVSG
IGAKTALGILSAMNADELAAAIAAEDIKRLSSAPGIGKKTAERMVLELRGKLTTFNGVQTQLAAQAGDSSEDIVSTLLAL
GYNEKEARAATKGIPADTEVGEGVRLALKNLLK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=1032058 CKV94_RS08765 WP_003821991.1 1739993..1740574(-) (ruvA) [Eikenella corrodens strain NCTC10596]
ATGATCAGCAAGCTCACCGGCAAACTCATCGAAGCCATCCCCCCGCAAGTCGTTATCGACGTAAACGGCGTCGCCTACGA
AGCCGACGTTTCCATGCAAACCTTCTACACCCTGCCCCCTGTGGGCGAAACCGTCTCGCTCTACACACAGCTCATCGTGC
GCGAAGACGCCCACCTTCTCTTCGGCTTCGGCAGCCACAGCGAACGCAACACCTTCCGCCAGCTCATCAAAGTGAGCGGC
ATCGGCGCCAAAACCGCGCTCGGCATCCTCTCCGCCATGAATGCCGACGAGCTCGCCGCCGCCATTGCCGCCGAAGACAT
CAAACGCCTCTCCTCCGCCCCCGGCATCGGCAAGAAAACCGCCGAACGCATGGTGCTCGAACTGCGCGGCAAACTCACTA
CCTTTAACGGCGTCCAAACCCAGCTCGCTGCTCAAGCAGGCGACAGCAGCGAAGACATCGTCAGCACCCTGCTCGCCCTC
GGCTACAACGAAAAAGAAGCCCGTGCCGCCACCAAAGGCATCCCAGCCGATACCGAAGTGGGCGAAGGCGTGCGCCTAGC
CTTGAAAAACCTGCTGAAATAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(150-191)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA N terminal domain (RuvA_N)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

36.869

100

0.378
  ruvA Streptococcus pneumoniae D39

36.869

100

0.378
  ruvA Streptococcus pneumoniae TIGR4

36.364

100

0.373
  ruvA Bacillus subtilis subsp. subtilis str. 168

33.649

100

0.368