Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV/pilI   Type   Regulator
Locus tag   CKV94_RS03240 Genome accession   NZ_LT906482
Coordinates   642707..643270 (+) Length   187 a.a.
NCBI ID   WP_049257748.1    Uniprot ID   -
Organism   Eikenella corrodens strain NCTC10596     
Function   repress natural transformation; antagonize ComP (predicted from homology)   
Competence regulation

Genomic Context

Location: 637707..648270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV94_RS03220 (SAMEA4412678_00647) - 637753..638442 (+) 690 WP_003824834.1 energy-coupling factor ABC transporter permease -
  CKV94_RS03225 (SAMEA4412678_00648) - 638786..640186 (+) 1401 WP_003824832.1 DEAD/DEAH box helicase -
  CKV94_RS03230 (SAMEA4412678_00649) dnaB 640582..641970 (+) 1389 WP_023887936.1 replicative DNA helicase -
  CKV94_RS03235 (SAMEA4412678_00650) pilH 642031..642687 (+) 657 WP_141744157.1 GspH/FimT family pseudopilin Machinery gene
  CKV94_RS03240 (SAMEA4412678_00651) pilV/pilI 642707..643270 (+) 564 WP_049257748.1 type IV pilus modification protein PilV Regulator
  CKV94_RS03245 (SAMEA4412678_00652) - 643277..644368 (+) 1092 WP_003824829.1 PilW family protein -
  CKV94_RS03250 (SAMEA4412678_00653) pilK 644350..644874 (+) 525 WP_035581278.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CKV94_RS03255 - 644887..645324 (+) 438 WP_049257746.1 type IV pilin protein -
  CKV94_RS03260 (SAMEA4412678_00654) pheT 645391..647751 (-) 2361 WP_003824825.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20030.62 Da        Isoelectric Point: 6.2157

>NTDB_id=1032023 CKV94_RS03240 WP_049257748.1 642707..643270(+) (pilV/pilI) [Eikenella corrodens strain NCTC10596]
MSNHKFILKPIHLNRGSTLLEVLISVFIMAFGIMALMLAQLKSVGNVREAEMQTRVAQAVQNLSAGMLSNPDVINNIGTH
SAATTKFTYTDYNKSTQNITPTSSAVDITVCGNATGIKRKALIACQLNAFTAELQNALPNATGISYAITSTSGDTPTTTI
EVKWTESNGDTQNSDDFNYSYSAVVGD

Nucleotide


Download         Length: 564 bp        

>NTDB_id=1032023 CKV94_RS03240 WP_049257748.1 642707..643270(+) (pilV/pilI) [Eikenella corrodens strain NCTC10596]
ATGTCTAATCATAAATTCATATTAAAGCCGATACATCTTAATCGAGGTAGTACTCTATTAGAAGTGCTCATTTCTGTATT
TATTATGGCATTTGGCATTATGGCTCTTATGCTTGCACAATTAAAATCTGTGGGTAACGTCCGTGAAGCAGAAATGCAAA
CTCGTGTTGCTCAGGCCGTACAGAACCTATCTGCTGGTATGTTAAGCAACCCTGATGTAATCAATAATATTGGCACTCAC
TCAGCTGCCACAACCAAATTCACCTACACCGACTATAATAAATCAACACAAAATATTACTCCTACATCATCTGCCGTCGA
TATTACCGTATGTGGTAATGCAACCGGCATAAAGCGTAAGGCTCTCATCGCCTGCCAACTAAATGCATTTACTGCAGAAC
TGCAAAATGCATTACCCAATGCGACCGGCATTTCATATGCAATTACTAGTACCTCTGGTGATACGCCCACTACTACAATC
GAGGTAAAATGGACAGAAAGTAATGGGGATACTCAAAATTCCGATGACTTTAACTATAGCTATAGTGCGGTTGTAGGAGA
CTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV/pilI Neisseria gonorrhoeae MS11

36.318

100

0.39
  pilV Neisseria meningitidis 8013

36.364

100

0.385