Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   CKV94_RS03235 Genome accession   NZ_LT906482
Coordinates   642031..642687 (+) Length   218 a.a.
NCBI ID   WP_141744157.1    Uniprot ID   -
Organism   Eikenella corrodens strain NCTC10596     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 637031..647687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV94_RS03215 (SAMEA4412678_00646) ung 637081..637740 (+) 660 WP_003824836.1 uracil-DNA glycosylase -
  CKV94_RS03220 (SAMEA4412678_00647) - 637753..638442 (+) 690 WP_003824834.1 energy-coupling factor ABC transporter permease -
  CKV94_RS03225 (SAMEA4412678_00648) - 638786..640186 (+) 1401 WP_003824832.1 DEAD/DEAH box helicase -
  CKV94_RS03230 (SAMEA4412678_00649) dnaB 640582..641970 (+) 1389 WP_023887936.1 replicative DNA helicase -
  CKV94_RS03235 (SAMEA4412678_00650) pilH 642031..642687 (+) 657 WP_141744157.1 GspH/FimT family pseudopilin Machinery gene
  CKV94_RS03240 (SAMEA4412678_00651) pilV/pilI 642707..643270 (+) 564 WP_049257748.1 type IV pilus modification protein PilV Regulator
  CKV94_RS03245 (SAMEA4412678_00652) - 643277..644368 (+) 1092 WP_003824829.1 PilW family protein -
  CKV94_RS03250 (SAMEA4412678_00653) pilK 644350..644874 (+) 525 WP_035581278.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CKV94_RS03255 - 644887..645324 (+) 438 WP_049257746.1 type IV pilin protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23655.02 Da        Isoelectric Point: 9.6552

>NTDB_id=1032022 CKV94_RS03235 WP_141744157.1 642031..642687(+) (pilH) [Eikenella corrodens strain NCTC10596]
MKTRQHTQGFTLIELLITLTLIGIMAAIAMPNLSNFIATQKLGNRINQITTIFRFARTEAVRRNSPVIICGGIKLKSDAK
PNNGCDKGGNSLLAFIDKNGNNDYESGIVNSSNDMDLRSVLINNESITINSLDIALSNPITDKNRFIFMPNGTFGVGKSN
GQYTYSSNYIRIAASDGKHVRMALIAPSGRVITCNGNMTPSEFNSLTASSYATYCALS

Nucleotide


Download         Length: 657 bp        

>NTDB_id=1032022 CKV94_RS03235 WP_141744157.1 642031..642687(+) (pilH) [Eikenella corrodens strain NCTC10596]
ATGAAGACACGACAACATACACAGGGCTTTACCCTGATAGAATTGCTCATTACCCTAACCCTGATTGGAATTATGGCTGC
AATTGCCATGCCGAACTTGAGTAATTTTATTGCCACACAAAAGCTTGGTAATAGAATAAACCAGATCACAACGATTTTCC
GATTTGCTAGAACTGAGGCTGTACGCAGAAACAGTCCTGTTATCATTTGTGGTGGTATTAAACTGAAATCTGATGCTAAA
CCCAATAATGGCTGTGATAAAGGAGGAAACTCCTTATTAGCATTTATCGACAAAAATGGTAATAATGACTATGAAAGTGG
CATCGTAAATTCTAGCAATGACATGGATCTGCGCTCAGTATTAATTAATAATGAGTCAATAACAATTAATAGTCTTGATA
TTGCCCTTAGCAACCCAATAACCGACAAGAATCGCTTTATTTTTATGCCCAATGGTACTTTTGGTGTTGGTAAATCTAAT
GGCCAATACACATACTCATCCAACTACATCAGAATAGCAGCGAGTGATGGGAAGCATGTCCGTATGGCTTTAATTGCACC
AAGTGGTCGTGTAATCACCTGCAACGGGAATATGACACCTTCTGAGTTCAATTCATTAACTGCAAGCAGTTATGCAACCT
ATTGTGCTTTATCTTAA

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(46-176)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

40.455

100

0.408