Detailed information NTG1031541

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: CKV86_RS11270
• Genome accession: NZ_LT906437
• Coordinates: 1889522..1890748 (-)
• Length: 408 a.a.
• NCBI ID: WP_047923710.1
• Uniprot ID: -
• Organism: Neisseria gonorrhoeae strain NCTC13799
• Function: mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1884522..1895748

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CKV86_RS11255 (SAMEA4076765_01955)	-	1886491..1886775 (+)	285	WP_003692093.1	GIY-YIG nuclease family protein	-
CKV86_RS11265 (SAMEA4076765_01956)	yccS	1887255..1889405 (-)	2151	WP_003697785.1	YccS family putative transporter	-
CKV86_RS11270 (SAMEA4076765_01957)	pilU	1889522..1890748 (-)	1227	WP_047923710.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
CKV86_RS11275 (SAMEA4076765_01958)	pilT	1890912..1891955 (-)	1044	WP_071200822.1	type IV pilus twitching motility protein PilT	Machinery gene
CKV86_RS11280 (SAMEA4076765_01959)	-	1892075..1892761 (+)	687	WP_003690201.1	YggS family pyridoxal phosphate-dependent enzyme	-
CKV86_RS11285 (SAMEA4076765_01960)	-	1892761..1893168 (+)	408	WP_003701818.1	hypothetical protein	-
CKV86_RS11290 (SAMEA4076765_01961)	proC	1893199..1894008 (+)	810	WP_228547131.1	pyrroline-5-carboxylate reductase	-
CKV86_RS11295 (SAMEA4076765_01962)	dksA	1894157..1894573 (+)	417	WP_003692108.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 408 a.a.
• Molecular weight: 45611.20 Da
• Isoelectric Point: 6.9230

>NTDB_id=1031541 CKV86_RS11270 WP_047923710.1 1889522..1890748(-) (pilU) [Neisseria gonorrhoeae strain NCTC13799]
MNTDNLHDILDETVQVYSQKNKAESETPAEIGAHFHPLLDRLCETAEAQNASDILISKGFPPSLKINSALTPQPQKALTG
EETAAIAASTMNAEQSEIFRRDGEINYSVQSRSGTRYRANAYYSQGSAGLVLRRINHVIPQMRELGLPEKLKDLAVAPRG
LLIIVGPTGSGKSTTMATMLEHRNKTLPGHIVTIEDPIEFIYKPRRCIFTQREIGVDTINWQTAVQNAMRQSPDVVCIGE
VRSRESMEYAMQLAQTGHLCIFTLHANTAPQSLERILNFYPKEQHNQILIDIALNLTGIICQRLALKKDKTGRTAVVDLL
INTPAIQDFILKGDLMNISKIMETAKTDGMQTMDQNLFELYRHGIISYEEALRQSVSANNLRLHIQLHKEGKTPELLYDR
VNGLNLIS

Nucleotide

• Length: 1227 bp

>NTDB_id=1031541 CKV86_RS11270 WP_047923710.1 1889522..1890748(-) (pilU) [Neisseria gonorrhoeae strain NCTC13799]
ATGAATACCGATAACCTGCACGACATCTTGGACGAAACGGTTCAAGTGTATTCTCAAAAAAACAAAGCCGAATCCGAAAC
CCCGGCCGAAATCGGCGCACACTTCCACCCGCTGCTCGACCGCCTGTGCGAAACCGCAGAAGCACAAAACGCGTCCGACA
TCCTTATCAGCAAAGGATTCCCGCCCTCGTTGAAAATCAACAGCGCATTAACCCCGCAGCCGCAAAAGGCTCTGACGGGC
GAGGAAACCGCCGCCATCGCCGCATCGACGATGAACGCCGAACAATCGGAAATATTCCGGCGCGACGGCGAAATCAACTA
CTCCGTCCAATCGCGCAGCGGCACGCGCTACCGCGCCAACGCCTACTACAGCCAAGGCAGCGCAGGTTTGGTTTTGCGGC
GCATCAACCACGTCATCCCGCAAATGCGGGAATTGGGCTTGCCCGAAAAACTCAAAGACCTCGCCGTCGCACCGCGCGGG
CTGCTGATTATCGTCGGGCCTACCGGTTCGGGCAAATCCACCACGATGGCGACTATGCTCGAACACCGCAACAAAACCCT
GCCCGGCCATATCGTTACCATCGAAGACCCGATTGAGTTTATCTACAAACCGCGCCGCTGCATCTTTACCCAGCGCGAAA
TCGGCGTCGACACCATAAACTGGCAGACGGCGGTACAAAACGCTATGCGCCAATCCCCAGACGTGGTCTGTATCGGCGAA
GTCCGCAGCAGGGAAAGTATGGAATACGCGATGCAGCTCGCCCAAACCGGCCACCTGTGCATTTTTACGCTCCACGCCAA
CACCGCGCCGCAGTCGCTCGAACGCATACTCAACTTCTACCCCAAAGAACAGCACAACCAAATACTGATTGACATCGCCC
TCAATCTGACCGGCATCATCTGCCAACGCCTCGCCCTCAAAAAAGACAAAACGGGCAGGACGGCGGTTGTCGACTTGCTC
ATCAACACGCCCGCCATCCAAGACTTCATCCTGAAGGGCGACCTGATGAACATCAGTAAAATCATGGAAACCGCCAAAAC
CGACGGAATGCAGACGATGGACCAAAACCTTTTCGAACTGTACCGTCACGGCATCATCAGTTACGAAGAAGCCCTGCGCC
AGTCCGTTTCCGCCAACAACCTGCGATTGCACATCCAACTGCACAAAGAAGGCAAAACGCCCGAACTCCTTTACGACAGG
GTCAACGGTCTCAACCTCATTTCCTGA

Domains

Predicted by InterProScan.

• Type II/IV secretion system protein (T2SSE) (49-305)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Acinetobacter baylyi ADP1	44.875	88.48	0.397
pilU	Pseudomonas stutzeri DSM 10701	45.225	87.255	0.395
pilU	Vibrio cholerae strain A1552	47.024	82.353	0.387