Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB8K34_RS12390 Genome accession   NZ_CP165751
Coordinates   2583455..2584051 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain CRE139     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2578455..2589051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8K34_RS12365 (AB8K34_12345) - 2578658..2580415 (-) 1758 WP_014907886.1 AAA family ATPase -
  AB8K34_RS12370 (AB8K34_12350) matP 2580601..2581053 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  AB8K34_RS12375 (AB8K34_12355) ompA 2581184..2582254 (-) 1071 WP_002898408.1 porin OmpA -
  AB8K34_RS12380 (AB8K34_12360) sulA 2582607..2583116 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  AB8K34_RS12385 (AB8K34_12365) - 2583149..2583364 (-) 216 WP_009485781.1 hypothetical protein -
  AB8K34_RS12390 (AB8K34_12370) sxy/tfoX 2583455..2584051 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  AB8K34_RS12395 (AB8K34_12375) yccS 2584065..2586200 (-) 2136 WP_087525924.1 YccS family putative transporter -
  AB8K34_RS12400 (AB8K34_12380) - 2586218..2586664 (-) 447 WP_014907884.1 YccF domain-containing protein -
  AB8K34_RS12405 (AB8K34_12385) helD 2586789..2588843 (+) 2055 WP_014907883.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1031483 AB8K34_RS12390 WP_004179217.1 2583455..2584051(+) (sxy/tfoX) [Klebsiella pneumoniae strain CRE139]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1031483 AB8K34_RS12390 WP_004179217.1 2583455..2584051(+) (sxy/tfoX) [Klebsiella pneumoniae strain CRE139]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment