Detailed information NTG1031256

Bioinformatically predicted

Overview

• Name: scnR
• Type: Regulator
• Locus tag: AB8B22_RS09375
• Genome accession: NZ_CP165644
• Coordinates: 1841069..1841773 (+)
• Length: 234 a.a.
• NCBI ID: WP_369710909.1
• Uniprot ID: A0AB39VF20
• Organism: Leptotrichia rugosa strain HSP-334
• Function: regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 1836069..1846773

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB8B22_RS09355 (AB8B22_09355)	-	1836926..1838629 (+)	1704	WP_369710906.1	AAA family ATPase	-
AB8B22_RS09360 (AB8B22_09360)	-	1838807..1839304 (+)	498	WP_369710907.1	methylated-DNA--[protein]-cysteine S-methyltransferase	-
AB8B22_RS09365 (AB8B22_09365)	-	1839346..1840284 (+)	939	WP_369710908.1	hypothetical protein	-
AB8B22_RS09370 (AB8B22_09370)	-	1840514..1840858 (-)	345	WP_036060094.1	hypothetical protein	-
AB8B22_RS09375 (AB8B22_09375)	scnR	1841069..1841773 (+)	705	WP_369710909.1	response regulator transcription factor	Regulator
AB8B22_RS09380 (AB8B22_09380)	-	1841904..1843163 (+)	1260	WP_369710910.1	sensor histidine kinase	-
AB8B22_RS09385 (AB8B22_09385)	-	1843349..1844014 (+)	666	WP_369710911.1	thiamine diphosphokinase	-
AB8B22_RS09390 (AB8B22_09390)	-	1844969..1846003 (+)	1035	WP_094079704.1	RluA family pseudouridine synthase	-

Sequence

Protein

• Length: 234 a.a.
• Molecular weight: 26732.19 Da
• Isoelectric Point: 5.4828

>NTDB_id=1031256 AB8B22_RS09375 WP_369710909.1 1841069..1841773(+) (scnR) [Leptotrichia rugosa strain HSP-334]
MIEKYLTNKCILIVDDEQEILDMTISILADYGYKNIQTAKSVKETMKCVEEKQPDLAILDVMLPDGNGFELLEKLRKVGD
YPILFLTARGEDEDKFKGFGLGADDYIVKPFLPKELLFRITAILRRTYKKESPIVNLNGCQIDFSCGEIIKDNKNIPLTA
KEYELLQTLYRNAGRIVTIDTLCEAVWGENAYVYTNSLMTHIRRIREKIEINPSHPVSLITMKGLGYKLIVEGK

Nucleotide

• Length: 705 bp

>NTDB_id=1031256 AB8B22_RS09375 WP_369710909.1 1841069..1841773(+) (scnR) [Leptotrichia rugosa strain HSP-334]
ATGATTGAAAAATATTTGACAAATAAATGTATTTTAATTGTTGATGATGAGCAGGAAATTTTAGATATGACTATATCAAT
TTTAGCTGATTACGGGTATAAAAATATACAGACTGCAAAAAGTGTGAAAGAAACTATGAAATGCGTTGAAGAAAAACAGC
CTGATTTAGCGATACTGGATGTTATGCTTCCAGATGGGAACGGTTTTGAATTACTGGAAAAGTTAAGAAAAGTTGGTGAT
TATCCAATATTATTTCTTACAGCACGTGGAGAAGATGAGGATAAATTCAAAGGCTTTGGATTGGGGGCGGACGACTATAT
TGTAAAGCCTTTTTTGCCAAAAGAGCTTTTATTTAGAATTACTGCTATTTTGCGGCGAACTTACAAAAAAGAAAGTCCAA
TTGTAAATTTAAATGGCTGTCAAATTGATTTTTCTTGTGGAGAAATTATAAAAGATAATAAAAATATACCGTTAACCGCA
AAGGAATATGAATTATTACAGACTCTTTACCGAAATGCTGGACGTATTGTAACTATAGATACATTGTGTGAAGCTGTATG
GGGCGAAAATGCCTATGTTTATACAAATTCACTGATGACACATATAAGACGTATTAGAGAAAAAATTGAAATTAACCCTT
CCCATCCTGTGTCATTAATAACAATGAAAGGATTAGGCTACAAACTAATTGTGGAGGGAAAATAA

Domains

Predicted by InterproScan.

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (154-229)

• Response regulator receiver domain (Response_reg) (11-120)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
scnR	Streptococcus mutans UA159	51.57	95.299	0.491
vicR	Streptococcus mutans UA159	39.738	97.863	0.389
micA	Streptococcus pneumoniae Cp1015	37.768	99.573	0.376