Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   CS885_RS04495 Genome accession   NZ_LT838273
Coordinates   911853..913829 (+) Length   658 a.a.
NCBI ID   WP_089087398.1    Uniprot ID   -
Organism   Helicobacter pylori isolate HE93/10_v1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 906853..918829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS885_RS04465 - 907179..907949 (+) 771 Protein_849 tetratricopeptide repeat protein -
  CS885_RS08375 - 908033..908173 (-) 141 WP_172825079.1 hypothetical protein -
  CS885_RS08380 - 908191..908391 (-) 201 WP_089086754.1 hypothetical protein -
  CS885_RS04480 - 908360..910738 (+) 2379 WP_231899382.1 DUF3519 domain-containing protein -
  CS885_RS04485 - 910748..911169 (+) 422 Protein_853 hypothetical protein -
  CS885_RS04490 - 911166..911759 (+) 594 Protein_854 hypothetical protein -
  CS885_RS04495 uvrB 911853..913829 (+) 1977 WP_089087398.1 excinuclease ABC subunit UvrB Machinery gene
  CS885_RS04500 - 913854..914687 (-) 834 WP_089087278.1 outer membrane protein -
  CS885_RS04505 purB 914985..916307 (-) 1323 WP_089087279.1 adenylosuccinate lyase -
  CS885_RS04510 - 916419..917363 (-) 945 WP_000238175.1 thiamine pyrophosphate-dependent enzyme -
  CS885_RS04515 - 917376..918599 (-) 1224 WP_000124341.1 2-oxoacid:ferredoxin oxidoreductase subunit alpha -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 75949.32 Da        Isoelectric Point: 6.7306

>NTDB_id=1031097 CS885_RS04495 WP_089087398.1 911853..913829(+) (uvrB) [Helicobacter pylori isolate HE93/10_v1]
MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANTIAQTNKPTLIMSHNKTLCAQLYSEFKAFF
PHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKI
KVGEKRAYKNFLLKLVEMGYSRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV
MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVCKGIENYARHFTGKAPNET
PFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNK
LELELSQKNVAEQIIRPTGLLDPKFEVRDSDKQVQDLFDEIKSVVARGERVLITTLTKKMAEELCKYYAEWGLKVRYMHS
EIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRAARNANGKVLLYAKKIT
QSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIKIAKALKKDKMPKSEREKIIKELDKKMRECAKNL
DFEEAMRLRDEITQLRTL

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=1031097 CS885_RS04495 WP_089087398.1 911853..913829(+) (uvrB) [Helicobacter pylori isolate HE93/10_v1]
ATGCCTTTATTTGATTTAAAAAGCCCTTATCCACCAGCAGGCGATCAGCCCCAAGCCATAGAAGCTTTAACGAAAAGCTT
GAAAAATAACAACCATTATCAAACTCTAGTGGGGGTTACAGGGAGCGGTAAGACTTACACGATGGCTAATACCATCGCTC
AAACCAATAAACCCACTTTGATCATGAGCCATAATAAGACCTTATGCGCGCAGCTTTATAGCGAGTTTAAGGCGTTTTTC
CCACACAATAGGGTGGAGTATTTTATCTCCCACTTTGATTACTACCAGCCTGAGAGCTATATCCCTAGGAGGGATTTATT
CATTGAAAAAGACAGCTCTATTAACGATGACTTGGAGCGTTTGAGATTGAGTGCGACCACTTCGCTTTTAGGTTATGATG
ATGTGATTGTGATAGCGAGCGTTTCGGCTAATTATGGTTTGGGTAACCCTGAAGAATATCTAAAAGTCATGGAAAAAATC
AAAGTGGGCGAGAAGCGCGCTTACAAGAACTTTTTATTAAAGCTAGTGGAAATGGGTTATAGCCGTAATGAAGTGGTGTT
TGATAGGGGGAGCTTTAGAGCGACTGGGGAATGCGTGGATATTTTCCCCGCTTATAATGACGCTGAATTTATTAGAATTG
AATTTTTTGGCGATGAGATAGAAAGGATTGCTGTCTTTGACGCCTTAGAAAGAAATGAAATCAAGCGTTTGGATTCTGTC
ATGCTTTATGCGGCCAGTCAGTTTGCCGTAGGGAGTGAGAGGTTGAATTTAGCCATTAAAAGCATTGAAGATGAACTCGC
TTTAAGATTGAAATTTTTTAAAGAGCAGGATAAAATGCTTGAATACAACCGCCTCAAACAACGCACCGAGCATGATTTAG
AAATGATTAGCGCGACCGGTGTGTGTAAGGGCATTGAAAATTACGCGCGCCATTTTACAGGTAAAGCCCCTAACGAAACG
CCTTTTTGCTTGTTTGATTATTTAGGGATATTTGAGCGGGAGTTTTTAGTCATTGTGGATGAAAGCCATGTGAGTTTGCC
GCAATTTGGGGGGATGTATGCAGGAGATATGAGCAGGAAAAGCGTTTTAGTGGAATATGGTTTTAGATTGCCTAGCGCTT
TAGACAACCGCCCTTTAAAGTTTGATGAATTTATCCATAAAAATTGCCAGTTCCTTTTTGTGTCCGCTACGCCCAATAAG
CTAGAATTAGAGCTTTCTCAAAAGAATGTCGCTGAGCAAATCATTCGCCCTACAGGGCTTTTAGACCCCAAATTTGAAGT
GCGAGACAGCGATAAGCAAGTCCAGGATTTATTTGATGAAATCAAGTCAGTGGTGGCTAGAGGTGAAAGGGTGCTCATCA
CCACGCTCACTAAAAAAATGGCAGAAGAATTGTGTAAATATTATGCTGAATGGGGCTTGAAGGTGCGTTACATGCATAGT
GAAATTGATGCGATTGAAAGGAATCACATTATCCGCTCTTTAAGGCTTAAGGAATTTGATGTTTTAATAGGGATCAATCT
TTTAAGAGAGGGGTTGGATTTGCCTGAAGTTTCTTTAGTAGCGATCATGGATGCGGATAAAGAAGGGTTTTTAAGGAGCG
AAACAAGCCTCATTCAAACCATGGGGCGAGCCGCTAGAAACGCTAATGGTAAGGTTTTATTATACGCTAAAAAGATCACT
CAAAGCATGCAAAAAGCCTTTGAGATCACGAGTTACAGGCGCGCCAAGCAAGAAGAGTTTAATAAAATCCATAACATCAC
CCCCAAAACCGTTACGCGCGCTTTAGAAGAGGAGTTGAAATTAAGAGACGATGAAATCAAAATCGCTAAAGCTTTAAAAA
AGGACAAGATGCCTAAAAGTGAAAGGGAAAAAATCATTAAAGAATTGGATAAAAAAATGCGAGAGTGCGCGAAAAATTTG
GATTTTGAAGAAGCGATGCGTTTGAGAGACGAAATCACTCAATTAAGAACGCTTTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(443-547)

UvrB interaction domain (UvrB_inter)

(159-248)

Ultra-violet resistance protein B (UvrB)

(554-595)

UvrB/uvrC motif (UVR)

(623-657)

Type III restriction enzyme, res subunit (ResIII)

(15-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

49.925

100

0.503
  uvrB Streptococcus pneumoniae TIGR4

49.925

100

0.503
  uvrB Streptococcus pneumoniae D39

49.925

100

0.503

Multiple sequence alignment