Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AB3D65_RS19535 Genome accession   NZ_CP165606
Coordinates   3846661..3847350 (+) Length   229 a.a.
NCBI ID   WP_369547642.1    Uniprot ID   -
Organism   Bacillus velezensis strain BP1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3841661..3852350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3D65_RS19510 (AB3D65_19510) degS 3841945..3843108 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  AB3D65_RS19515 (AB3D65_19515) degU 3843185..3843874 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB3D65_RS19520 (AB3D65_19520) - 3843972..3844820 (+) 849 WP_003151387.1 DegV family protein -
  AB3D65_RS19525 (AB3D65_19525) comFA 3844928..3846313 (+) 1386 WP_369547539.1 DEAD/DEAH box helicase Machinery gene
  AB3D65_RS19530 (AB3D65_19530) - 3846371..3846655 (+) 285 WP_007407481.1 late competence development ComFB family protein -
  AB3D65_RS19535 (AB3D65_19535) comFC 3846661..3847350 (+) 690 WP_369547642.1 phosphoribosyltransferase family protein Machinery gene
  AB3D65_RS19540 (AB3D65_19540) - 3847424..3847843 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  AB3D65_RS19545 (AB3D65_19545) flgM 3847913..3848179 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB3D65_RS19550 (AB3D65_19550) - 3848194..3848676 (+) 483 WP_003151394.1 flagellar protein FlgN -
  AB3D65_RS19555 (AB3D65_19555) flgK 3848692..3850209 (+) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  AB3D65_RS19560 (AB3D65_19560) flgL 3850221..3851138 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  AB3D65_RS19565 (AB3D65_19565) - 3851229..3851798 (+) 570 WP_369547540.1 DUF6470 family protein -
  AB3D65_RS19570 (AB3D65_19570) fliW 3851828..3852259 (+) 432 WP_007407475.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25228.89 Da        Isoelectric Point: 8.4871

>NTDB_id=1030840 AB3D65_RS19535 WP_369547642.1 3846661..3847350(+) (comFC) [Bacillus velezensis strain BP1]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAKGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1030840 AB3D65_RS19535 WP_369547642.1 3846661..3847350(+) (comFC) [Bacillus velezensis strain BP1]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCTGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CAAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.471

99.127

0.59

Multiple sequence alignment