Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AB3D65_RS19515 Genome accession   NZ_CP165606
Coordinates   3843185..3843874 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain BP1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3838185..3848874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3D65_RS19495 (AB3D65_19495) - 3838675..3839751 (+) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  AB3D65_RS19500 (AB3D65_19500) - 3839850..3841070 (-) 1221 WP_151296026.1 LCP family protein -
  AB3D65_RS19505 (AB3D65_19505) - 3841075..3841722 (-) 648 WP_007614107.1 YigZ family protein -
  AB3D65_RS19510 (AB3D65_19510) degS 3841945..3843108 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  AB3D65_RS19515 (AB3D65_19515) degU 3843185..3843874 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB3D65_RS19520 (AB3D65_19520) - 3843972..3844820 (+) 849 WP_003151387.1 DegV family protein -
  AB3D65_RS19525 (AB3D65_19525) comFA 3844928..3846313 (+) 1386 WP_369547539.1 DEAD/DEAH box helicase Machinery gene
  AB3D65_RS19530 (AB3D65_19530) - 3846371..3846655 (+) 285 WP_007407481.1 late competence development ComFB family protein -
  AB3D65_RS19535 (AB3D65_19535) comFC 3846661..3847350 (+) 690 WP_369547642.1 phosphoribosyltransferase family protein Machinery gene
  AB3D65_RS19540 (AB3D65_19540) - 3847424..3847843 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  AB3D65_RS19545 (AB3D65_19545) flgM 3847913..3848179 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB3D65_RS19550 (AB3D65_19550) - 3848194..3848676 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1030838 AB3D65_RS19515 WP_003219701.1 3843185..3843874(+) (degU) [Bacillus velezensis strain BP1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1030838 AB3D65_RS19515 WP_003219701.1 3843185..3843874(+) (degU) [Bacillus velezensis strain BP1]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment