Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AB3D65_RS19525 Genome accession   NZ_CP165606
Coordinates   3844928..3846313 (+) Length   461 a.a.
NCBI ID   WP_369547539.1    Uniprot ID   -
Organism   Bacillus velezensis strain BP1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3839928..3851313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3D65_RS19505 (AB3D65_19505) - 3841075..3841722 (-) 648 WP_007614107.1 YigZ family protein -
  AB3D65_RS19510 (AB3D65_19510) degS 3841945..3843108 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  AB3D65_RS19515 (AB3D65_19515) degU 3843185..3843874 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB3D65_RS19520 (AB3D65_19520) - 3843972..3844820 (+) 849 WP_003151387.1 DegV family protein -
  AB3D65_RS19525 (AB3D65_19525) comFA 3844928..3846313 (+) 1386 WP_369547539.1 DEAD/DEAH box helicase Machinery gene
  AB3D65_RS19530 (AB3D65_19530) - 3846371..3846655 (+) 285 WP_007407481.1 late competence development ComFB family protein -
  AB3D65_RS19535 (AB3D65_19535) comFC 3846661..3847350 (+) 690 WP_369547642.1 phosphoribosyltransferase family protein Machinery gene
  AB3D65_RS19540 (AB3D65_19540) - 3847424..3847843 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  AB3D65_RS19545 (AB3D65_19545) flgM 3847913..3848179 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB3D65_RS19550 (AB3D65_19550) - 3848194..3848676 (+) 483 WP_003151394.1 flagellar protein FlgN -
  AB3D65_RS19555 (AB3D65_19555) flgK 3848692..3850209 (+) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  AB3D65_RS19560 (AB3D65_19560) flgL 3850221..3851138 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52728.18 Da        Isoelectric Point: 10.1675

>NTDB_id=1030839 AB3D65_RS19525 WP_369547539.1 3844928..3846313(+) (comFA) [Bacillus velezensis strain BP1]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYYWNQAHENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSHLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGITVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITSGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1030839 AB3D65_RS19525 WP_369547539.1 3844928..3846313(+) (comFA) [Bacillus velezensis strain BP1]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTATTGGAATCAAGCCCATGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACATCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGATTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATCACAAGCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(330-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.174

99.783

0.62

Multiple sequence alignment