Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AB3D65_RS04390 Genome accession   NZ_CP165606
Coordinates   775559..775894 (-) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain BP1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 770559..780894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3D65_RS04340 (AB3D65_04340) comGC 770749..771057 (+) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  AB3D65_RS04345 (AB3D65_04345) comGD 771047..771484 (+) 438 WP_369546435.1 competence type IV pilus minor pilin ComGD Machinery gene
  AB3D65_RS04350 (AB3D65_04350) comGE 771468..771782 (+) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  AB3D65_RS04355 (AB3D65_04355) comGF 771691..772191 (+) 501 WP_369546436.1 competence type IV pilus minor pilin ComGF -
  AB3D65_RS04360 (AB3D65_04360) comGG 772192..772569 (+) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  AB3D65_RS04365 (AB3D65_04365) - 772626..772805 (+) 180 WP_003153093.1 YqzE family protein -
  AB3D65_RS04370 (AB3D65_04370) - 772845..773174 (-) 330 WP_012117979.1 DUF3889 domain-containing protein -
  AB3D65_RS04375 (AB3D65_04375) tapA 773433..774104 (+) 672 WP_151296368.1 amyloid fiber anchoring/assembly protein TapA -
  AB3D65_RS04380 (AB3D65_04380) sipW 774076..774660 (+) 585 WP_012117977.1 signal peptidase I SipW -
  AB3D65_RS04385 (AB3D65_04385) tasA 774726..775511 (+) 786 WP_007408329.1 biofilm matrix protein TasA -
  AB3D65_RS04390 (AB3D65_04390) sinR 775559..775894 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  AB3D65_RS04395 (AB3D65_04395) sinI 775928..776101 (-) 174 WP_003153105.1 anti-repressor SinI Regulator
  AB3D65_RS04400 (AB3D65_04400) - 776278..777072 (-) 795 WP_369546439.1 YqhG family protein -
  AB3D65_RS04405 (AB3D65_04405) - 777094..778764 (-) 1671 WP_132105375.1 DEAD/DEAH box helicase -
  AB3D65_RS04410 (AB3D65_04410) gcvT 779188..780288 (+) 1101 WP_283886845.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1030789 AB3D65_RS04390 WP_003153104.1 775559..775894(-) (sinR) [Bacillus velezensis strain BP1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1030789 AB3D65_RS04390 WP_003153104.1 775559..775894(-) (sinR) [Bacillus velezensis strain BP1]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment