Detailed information NTG1030780

Bioinformatically predicted

Overview

• Name: comEA
• Type: Machinery gene
• Locus tag: AB3D65_RS03905
• Genome accession: NZ_CP165606
• Coordinates: 692588..693202 (+)
• Length: 204 a.a.
• NCBI ID: WP_020956097.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain BP1
• Function: dsDNA binding to the cell surface (predicted from homology) DNA binding and uptake

Genomic Context

Location: 687588..698202

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3D65_RS03870 (AB3D65_03870)	aroE	688276..689118 (+)	843	WP_369546412.1	shikimate dehydrogenase	-
AB3D65_RS03875 (AB3D65_03875)	yhbY	689112..689402 (+)	291	WP_003152858.1	ribosome assembly RNA-binding protein YhbY	-
AB3D65_RS03880 (AB3D65_03880)	-	689413..689982 (+)	570	WP_007408258.1	nicotinate-nucleotide adenylyltransferase	-
AB3D65_RS03885 (AB3D65_03885)	yqeK	689972..690532 (+)	561	WP_369546413.1	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK	-
AB3D65_RS03890 (AB3D65_03890)	rsfS	690549..690905 (+)	357	WP_007408260.1	ribosome silencing factor	-
AB3D65_RS03895 (AB3D65_03895)	-	690902..691639 (+)	738	WP_015240247.1	class I SAM-dependent DNA methyltransferase	-
AB3D65_RS03900 (AB3D65_03900)	comER	691708..692529 (-)	822	WP_012118027.1	late competence protein ComER	-
AB3D65_RS03905 (AB3D65_03905)	comEA	692588..693202 (+)	615	WP_020956097.1	helix-hairpin-helix domain-containing protein	Machinery gene
AB3D65_RS03910 (AB3D65_03910)	-	693268..693837 (+)	570	WP_003152868.1	ComE operon protein 2	-
AB3D65_RS03915 (AB3D65_03915)	comEC	693838..696189 (+)	2352	WP_369546414.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
AB3D65_RS03920 (AB3D65_03920)	-	696208..696342 (-)	135	WP_003152870.1	YqzM family protein	-
AB3D65_RS03925 (AB3D65_03925)	-	696383..696534 (+)	152	Protein_705	hypothetical protein	-
AB3D65_RS03930 (AB3D65_03930)	holA	696574..697615 (+)	1042	Protein_706	DNA polymerase III subunit delta	-
AB3D65_RS03935 (AB3D65_03935)	rpsT	697632..697898 (-)	267	WP_003152876.1	30S ribosomal protein S20	-

Sequence

Protein

• Length: 204 a.a.
• Molecular weight: 22251.45 Da
• Isoelectric Point: 6.4940

>NTDB_id=1030780 AB3D65_RS03905 WP_020956097.1 692588..693202(+) (comEA) [Bacillus velezensis strain BP1]
MTKAMMTERLRRNLKILGACLVAGAVFICIWLFRSEKEEPVKQQSVLGQTASASVADKKDTADDKIMIDVKGAVRNPGVY
EMKAGDRVTQAIEKAGGLKKKADELNVNLAEQLQDGTIVYIPSEGEEENRPKTAAGEKENAAVNINTASLDELQAISGVG
QKKAEAIIAYREEKGRFQTAEDLMNVSGFGEKSFERIKTSITVK

Nucleotide

• Length: 615 bp

>NTDB_id=1030780 AB3D65_RS03905 WP_020956097.1 692588..693202(+) (comEA) [Bacillus velezensis strain BP1]
ATGACGAAAGCGATGATGACGGAGCGGCTGCGGCGGAACCTGAAAATTCTGGGCGCTTGTCTTGTAGCAGGGGCGGTTTT
TATCTGCATTTGGCTGTTTCGTTCTGAAAAGGAAGAGCCGGTCAAACAGCAGTCCGTGCTCGGCCAAACAGCCTCAGCAT
CCGTTGCGGACAAAAAAGACACCGCAGACGATAAGATTATGATTGATGTGAAAGGTGCGGTCCGAAATCCCGGCGTGTAT
GAAATGAAAGCGGGAGACAGAGTGACGCAAGCCATTGAAAAAGCCGGCGGCCTGAAGAAAAAGGCGGATGAATTGAATGT
TAATTTAGCAGAGCAGCTGCAGGACGGGACGATTGTTTATATTCCGAGTGAAGGCGAAGAGGAGAATCGCCCGAAAACAG
CGGCGGGTGAAAAGGAGAATGCAGCTGTCAATATCAATACGGCATCTCTGGACGAACTTCAGGCGATTTCCGGGGTGGGG
CAGAAAAAAGCGGAAGCGATTATCGCTTACCGAGAAGAAAAAGGACGGTTTCAGACTGCTGAAGATTTGATGAATGTATC
AGGCTTTGGAGAGAAGTCATTTGAGCGGATAAAAACTTCCATTACGGTAAAGTGA

Domains

Predicted by InterproScan.

• SLBB domain (SLBB) (68-122)

• Helix-hairpin-helix motif (HHH_3) (141-202)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEA	Bacillus subtilis subsp. subtilis str. 168	58.115	93.627	0.544
comEA	Latilactobacillus sakei subsp. sakei 23K	31.897	100	0.363
comEA/celA/cilE	Streptococcus pneumoniae TIGR4	35.071	100	0.363