Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | AB7I05_RS03010 | Genome accession | NZ_CP165604 |
| Coordinates | 598550..598963 (+) | Length | 137 a.a. |
| NCBI ID | WP_005693727.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain Rd-KW20 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 593550..603963
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB7I05_RS02990 (AB7I05_02990) | - | 594038..596632 (-) | 2595 | WP_005693721.1 | penicillin-binding protein 1A | - |
| AB7I05_RS02995 (AB7I05_02995) | comA | 596731..597528 (+) | 798 | WP_005693722.1 | competence protein A | Machinery gene |
| AB7I05_RS03000 (AB7I05_03000) | comB | 597529..598035 (+) | 507 | WP_005693724.1 | competence protein ComB | Machinery gene |
| AB7I05_RS03005 (AB7I05_03005) | comC | 598032..598553 (+) | 522 | WP_005693726.1 | competence protein ComC | Machinery gene |
| AB7I05_RS03010 (AB7I05_03010) | comD | 598550..598963 (+) | 414 | WP_005693727.1 | pilus assembly protein PilP | Machinery gene |
| AB7I05_RS03015 (AB7I05_03015) | comE | 598973..600310 (+) | 1338 | WP_005693728.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| AB7I05_RS03020 (AB7I05_03020) | - | 600322..601008 (+) | 687 | WP_032828380.1 | ComF family protein | - |
| AB7I05_RS03025 (AB7I05_03025) | nfuA | 601084..601680 (+) | 597 | WP_005693730.1 | Fe-S biogenesis protein NfuA | - |
| AB7I05_RS03030 (AB7I05_03030) | nudC | 601747..602541 (+) | 795 | WP_005693731.1 | NAD(+) diphosphatase | - |
| AB7I05_RS03035 (AB7I05_03035) | - | 602577..603167 (+) | 591 | WP_005693732.1 | YjaG family protein | - |
| AB7I05_RS03040 (AB7I05_03040) | - | 603307..603579 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15681.82 Da Isoelectric Point: 4.5625
>NTDB_id=1030751 AB7I05_RS03010 WP_005693727.1 598550..598963(+) (comD) [Haemophilus influenzae strain Rd-KW20]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=1030751 AB7I05_RS03010 WP_005693727.1 598550..598963(+) (comD) [Haemophilus influenzae strain Rd-KW20]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAAACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGGGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAAACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGGGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
100 |
100 |
1 |
| comD | Haemophilus influenzae 86-028NP |
99.27 |
100 |
0.993 |