Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Machinery gene |
| Locus tag | AB7I05_RS03000 | Genome accession | NZ_CP165604 |
| Coordinates | 597529..598035 (+) | Length | 168 a.a. |
| NCBI ID | WP_005693724.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain Rd-KW20 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 592529..603035
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB7I05_RS02980 (AB7I05_02980) | - | 592623..592952 (-) | 330 | WP_005629464.1 | YbaB/EbfC family nucleoid-associated protein | - |
| AB7I05_RS02985 (AB7I05_02985) | - | 593105..593950 (-) | 846 | WP_005693720.1 | 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ | - |
| AB7I05_RS02990 (AB7I05_02990) | - | 594038..596632 (-) | 2595 | WP_005693721.1 | penicillin-binding protein 1A | - |
| AB7I05_RS02995 (AB7I05_02995) | comA | 596731..597528 (+) | 798 | WP_005693722.1 | competence protein A | Machinery gene |
| AB7I05_RS03000 (AB7I05_03000) | comB | 597529..598035 (+) | 507 | WP_005693724.1 | competence protein ComB | Machinery gene |
| AB7I05_RS03005 (AB7I05_03005) | comC | 598032..598553 (+) | 522 | WP_005693726.1 | competence protein ComC | Machinery gene |
| AB7I05_RS03010 (AB7I05_03010) | comD | 598550..598963 (+) | 414 | WP_005693727.1 | pilus assembly protein PilP | Machinery gene |
| AB7I05_RS03015 (AB7I05_03015) | comE | 598973..600310 (+) | 1338 | WP_005693728.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| AB7I05_RS03020 (AB7I05_03020) | - | 600322..601008 (+) | 687 | WP_032828380.1 | ComF family protein | - |
| AB7I05_RS03025 (AB7I05_03025) | nfuA | 601084..601680 (+) | 597 | WP_005693730.1 | Fe-S biogenesis protein NfuA | - |
| AB7I05_RS03030 (AB7I05_03030) | nudC | 601747..602541 (+) | 795 | WP_005693731.1 | NAD(+) diphosphatase | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 19750.69 Da Isoelectric Point: 8.5473
>NTDB_id=1030749 AB7I05_RS03000 WP_005693724.1 597529..598035(+) (comB) [Haemophilus influenzae strain Rd-KW20]
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLNQQLHKTTMQIDQLRIAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLNQQLHKTTMQIDQLRIAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
Nucleotide
Download Length: 507 bp
>NTDB_id=1030749 AB7I05_RS03000 WP_005693724.1 597529..598035(+) (comB) [Haemophilus influenzae strain Rd-KW20]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTCGTTTGAACAACTTAATCAACAGCTTCATAAAACTACCATGCAAATTGATCAGTTACGCATTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGCTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTCGTTTGAACAACTTAATCAACAGCTTCATAAAACTACCATGCAAATTGATCAGTTACGCATTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGCTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Haemophilus influenzae Rd KW20 |
100 |
100 |
1 |
| comB | Haemophilus influenzae 86-028NP |
98.81 |
100 |
0.988 |