Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AB6L51_RS16795 Genome accession   NZ_CP163562
Coordinates   3227840..3228529 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain BC255T1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3222840..3233529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6L51_RS16760 (AB6L51_16755) - 3222926..3223408 (-) 483 WP_007499977.1 flagellar protein FlgN -
  AB6L51_RS16765 (AB6L51_16760) flgM 3223427..3223690 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB6L51_RS16770 (AB6L51_16765) - 3223770..3224189 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  AB6L51_RS16775 (AB6L51_16770) comFC 3224246..3224827 (-) 582 WP_234717161.1 ComF family protein Machinery gene
  AB6L51_RS16780 (AB6L51_16775) - 3224929..3225222 (-) 294 WP_035701582.1 late competence development ComFB family protein -
  AB6L51_RS16785 (AB6L51_16780) comFA 3225287..3226666 (-) 1380 WP_142675479.1 DEAD/DEAH box helicase Machinery gene
  AB6L51_RS16790 (AB6L51_16785) - 3226786..3227628 (-) 843 WP_024719242.1 DegV family protein -
  AB6L51_RS16795 (AB6L51_16790) degU 3227840..3228529 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  AB6L51_RS16800 (AB6L51_16795) degS 3228594..3229769 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  AB6L51_RS16805 (AB6L51_16800) - 3229991..3230659 (+) 669 WP_017357860.1 YigZ family protein -
  AB6L51_RS16810 (AB6L51_16805) - 3230644..3231735 (+) 1092 WP_025208065.1 LCP family protein -
  AB6L51_RS16815 (AB6L51_16810) - 3231772..3232839 (-) 1068 WP_007499956.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=1030694 AB6L51_RS16795 WP_008348273.1 3227840..3228529(-) (degU) [Bacillus altitudinis strain BC255T1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1030694 AB6L51_RS16795 WP_008348273.1 3227840..3228529(-) (degU) [Bacillus altitudinis strain BC255T1]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAATGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment