Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | AB6W33_RS09820 | Genome accession | NZ_CP163561 |
| Coordinates | 1877767..1878258 (-) | Length | 163 a.a. |
| NCBI ID | WP_000609585.1 | Uniprot ID | A0AAV3JH34 |
| Organism | Streptococcus agalactiae strain GBS-B4009 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1872767..1883258
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB6W33_RS09805 (AB6W33_09790) | - | 1875673..1876344 (-) | 672 | WP_000174846.1 | DUF1129 domain-containing protein | - |
| AB6W33_RS09810 (AB6W33_09795) | - | 1876369..1877313 (-) | 945 | WP_000812121.1 | magnesium transporter CorA family protein | - |
| AB6W33_RS09815 (AB6W33_09800) | rpsR | 1877483..1877722 (-) | 240 | WP_000068665.1 | 30S ribosomal protein S18 | - |
| AB6W33_RS09820 (AB6W33_09805) | ssbA | 1877767..1878258 (-) | 492 | WP_000609585.1 | single-stranded DNA-binding protein | Machinery gene |
| AB6W33_RS09825 (AB6W33_09810) | rpsF | 1878270..1878557 (-) | 288 | WP_001151773.1 | 30S ribosomal protein S6 | - |
| AB6W33_RS09830 (AB6W33_09815) | mutY | 1879621..1880775 (+) | 1155 | WP_161512236.1 | A/G-specific adenine glycosylase | - |
| AB6W33_RS09835 (AB6W33_09820) | - | 1880952..1881545 (+) | 594 | WP_000402394.1 | helix-turn-helix domain-containing protein | - |
| AB6W33_RS09840 (AB6W33_09825) | trxA | 1881591..1881923 (-) | 333 | WP_001932060.1 | thioredoxin | - |
| AB6W33_RS09845 (AB6W33_09830) | - | 1881986..1882486 (-) | 501 | WP_000446812.1 | phosphatase PAP2 family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18165.81 Da Isoelectric Point: 4.9119
>NTDB_id=1030632 AB6W33_RS09820 WP_000609585.1 1877767..1878258(-) (ssbA) [Streptococcus agalactiae strain GBS-B4009]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=1030632 AB6W33_RS09820 WP_000609585.1 1877767..1878258(-) (ssbA) [Streptococcus agalactiae strain GBS-B4009]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACGCGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACGCGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.714 |
100 |
0.62 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.064 |
100 |
0.62 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
55.963 |
66.871 |
0.374 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
65.031 |
0.368 |