Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   AB6W33_RS04560 Genome accession   NZ_CP163561
Coordinates   803020..804024 (+) Length   334 a.a.
NCBI ID   WP_050881957.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBS-B4009     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 798020..809024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6W33_RS04540 (AB6W33_04540) - 798057..798896 (+) 840 WP_000047578.1 SDR family oxidoreductase -
  AB6W33_RS04545 (AB6W33_04545) - 799049..799861 (+) 813 WP_000228638.1 HAD family hydrolase -
  AB6W33_RS04550 (AB6W33_04550) - 799877..801667 (+) 1791 WP_000149454.1 glycoside hydrolase family 3 protein -
  AB6W33_RS04555 (AB6W33_04555) - 801725..802810 (-) 1086 WP_000040811.1 Xaa-Pro peptidase family protein -
  AB6W33_RS04560 (AB6W33_04560) ccpA 803020..804024 (+) 1005 WP_050881957.1 catabolite control protein A Regulator
  AB6W33_RS04565 (AB6W33_04565) - 804156..805622 (+) 1467 WP_000180590.1 alpha-amylase -
  AB6W33_RS04570 (AB6W33_04570) - 805667..806665 (+) 999 WP_000866350.1 glycosyltransferase family 4 protein -
  AB6W33_RS04575 (AB6W33_04575) - 806667..808001 (+) 1335 WP_001219475.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36616.75 Da        Isoelectric Point: 6.2594

>NTDB_id=1030611 AB6W33_RS04560 WP_050881957.1 803020..804024(+) (ccpA) [Streptococcus agalactiae strain GBS-B4009]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFS
ILARGIDDIAAMYKYNIVLASSDEDDDKEVNVVNTLFAKQVDGIIFMGHHLTEKIRAEFSRSRTPIVLAGTVDLEHQLPS
VNIDYKAAAVDVIDILAGNHKDIAFVSGPLIDDINGKVRLAGYKEGLKKNGLNFKEGLVFEANYRYAEGFALAQRVINAG
ATAAYVAEDELAAGLLNGLFEAGKRVPKDFEIITSNDSPIAQYTRPNLTSISQPVYDLGAVSMRMLTKIMHKEELEEKEI
VLNHGIVKRGTTNN

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=1030611 AB6W33_RS04560 WP_050881957.1 803020..804024(+) (ccpA) [Streptococcus agalactiae strain GBS-B4009]
ATGAATACAGATGATACGATTACGATTTATGATGTTGCCCGTGAAGCAGGTGTTTCGATGGCAACTGTTAGTCGTGTGGT
AAATGGAAATAAAAATGTCAAGGAAAATACACGTAAGAAAGTCCTTGAAGTTATTGATCGTCTTGACTATCGTCCAAATG
CTGTGGCGCGTGGTTTAGCAAGTAAAAAAACGACAACTGTTGGTGTTGTCATTCCTAATATCGCAAATAGCTACTTTTCA
ATTTTAGCGCGTGGTATTGATGATATTGCAGCAATGTACAAATATAACATTGTCCTTGCTTCAAGTGATGAAGACGATGA
TAAAGAGGTTAATGTTGTTAATACTTTGTTTGCTAAGCAAGTAGACGGTATTATTTTTATGGGACACCACTTAACTGAAA
AGATTCGTGCAGAGTTCTCTCGTTCACGCACACCGATTGTTTTAGCAGGTACTGTGGACCTTGAGCATCAATTACCAAGT
GTTAATATCGATTACAAAGCAGCAGCAGTTGATGTTATTGATATTTTAGCTGGCAATCATAAAGACATTGCTTTTGTATC
AGGACCACTTATTGACGATATTAATGGCAAGGTTCGTTTGGCAGGATACAAAGAAGGTCTCAAGAAAAATGGCTTAAACT
TTAAAGAGGGGTTGGTTTTTGAAGCCAACTACCGTTATGCTGAAGGCTTTGCATTAGCTCAACGCGTGATTAATGCTGGA
GCAACAGCAGCATATGTTGCTGAGGATGAGTTAGCGGCAGGTTTGTTAAATGGTCTTTTTGAGGCAGGTAAACGTGTTCC
TAAAGATTTTGAAATTATCACAAGCAATGACTCGCCAATCGCACAATATACACGTCCTAACTTAACTTCTATCAGTCAAC
CGGTCTATGATTTGGGTGCTGTTAGCATGCGTATGCTAACAAAAATTATGCACAAAGAAGAGTTGGAAGAAAAAGAAATA
GTGCTTAATCACGGGATTGTTAAACGTGGCACAACAAATAATTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(179-332)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

78.614

99.401

0.781
  ccpA Streptococcus pneumoniae D39

76.807

99.401

0.763
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

57.1

99.102

0.566

Multiple sequence alignment