Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB6N81_RS07765 Genome accession   NZ_CP163559
Coordinates   1550656..1551165 (-) Length   169 a.a.
NCBI ID   WP_002447681.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain B273     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1545656..1556165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6N81_RS07730 (AB6N81_07695) - 1546370..1546939 (+) 570 WP_369351680.1 hypothetical protein -
  AB6N81_RS07735 (AB6N81_07700) - 1547126..1547875 (-) 750 WP_203162419.1 hypothetical protein -
  AB6N81_RS07740 (AB6N81_07705) - 1548002..1548139 (-) 138 Protein_1432 terminase small subunit -
  AB6N81_RS07745 (AB6N81_07710) - 1549314..1549502 (-) 189 WP_134294379.1 hypothetical protein -
  AB6N81_RS07750 (AB6N81_07715) - 1549635..1549901 (-) 267 Protein_1434 terminase small subunit -
  AB6N81_RS07755 (AB6N81_07720) - 1549909..1550144 (+) 236 Protein_1435 Abi family protein -
  AB6N81_RS07760 (AB6N81_07725) rpsR 1550369..1550611 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  AB6N81_RS07765 (AB6N81_07730) ssbA 1550656..1551165 (-) 510 WP_002447681.1 single-stranded DNA-binding protein Machinery gene
  AB6N81_RS07770 (AB6N81_07735) rpsF 1551188..1551484 (-) 297 WP_001831345.1 30S ribosomal protein S6 -
  AB6N81_RS07775 (AB6N81_07740) - 1551869..1552677 (+) 809 Protein_1439 GH25 family lysozyme -
  AB6N81_RS07780 (AB6N81_07745) - 1552751..1552942 (+) 192 WP_001831355.1 hypothetical protein -
  AB6N81_RS07785 (AB6N81_07750) ychF 1553174..1554271 (-) 1098 WP_369351683.1 redox-regulated ATPase YchF -
  AB6N81_RS07790 (AB6N81_07755) - 1554283..1554486 (-) 204 WP_001831361.1 DUF951 domain-containing protein -
  AB6N81_RS07795 (AB6N81_07760) - 1554507..1555382 (-) 876 WP_369351685.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18671.19 Da        Isoelectric Point: 4.7078

>NTDB_id=1030580 AB6N81_RS07765 WP_002447681.1 1550656..1551165(-) (ssbA) [Staphylococcus epidermidis strain B273]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQQGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=1030580 AB6N81_RS07765 WP_002447681.1 1550656..1551165(-) (ssbA) [Staphylococcus epidermidis strain B273]
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAATTCCTTGAACCTAAAAA
CGCACAACAAGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT
GATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.68
  ssb Latilactobacillus sakei subsp. sakei 23K

55.747

100

0.574
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

66.272

0.379

Multiple sequence alignment